Query= MSMg01no098_b08.b1 MSMg01no098_b08.b1 CHROMAT_FILE:
MSMg01no098_b08.b1 PHD_FILE: MSMg01no098_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:04 2005
(622 letters)
>mm_chr6_15871904_15872925
Length = 1022
Score = 994 bits (514), Expect = 0.0
Identities = 526/530 (99%), Gaps = 1/530 (0%)
Strand = Plus / Minus
Query: 5 gaattcccatagtctactttttggccgaatttttaacttgatttaccatctcatgcatgc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaattcccatagcctactttttggccgaatttttaacttgatttaccatctcatgcatgc 470
Query: 65 ttttcaaccacctactctggggattccaataaaaacttcatatgaaaatttaatagaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttttcaaccacctactctggggattccaataaaaacttcatatgaaaatttaatagaaaa 410
Query: 125 aaatggaaactaatataagcaaatgtaggtggcaatgtttctgactctggagtgcataaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaatggaaactaatataagcaaatgtaggtggcaatgtttctgactctggagtgcataaa 350
Query: 185 gattcatgagtcaagacccaaaacacgcagtaaagaaaaggctaaatcagagttgcatag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gattcatgagtcaagacccaaaacacgcagtaaagaaaaggctaaatcagagttgcatag 290
Query: 245 atgttcttcattgttaacaaagactaatagactcacagtcaagaaagatgttacagttat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atgttcttcattgttaacaaagactaatagactcacagtcaagaaagatgttacagttat 230
Query: 305 taaaacaaaaacagtgaattagggactaatgtctataatcagaaaaaaaccctttaacac 364
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 229 taaaacaaaaacagtgaattagggactaatttctataatcagaaaaaaaccctttaacac 170
Query: 365 tccaaacaaaaaaaaaaccaaaactcactaaaaacacaaaaaggagtgaaagacagggag 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tccaaacaaaaaaaaa-ccaaaactcactaaaaacacaaaaaggagtgaaagacagggag 111
Query: 425 aagaacttacacaagggaacacagacaactgagtgtttgaagagacattagatctgaatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 aagaacttacacaagggaacacagacaactgagtgtttgaagagacattagatctgaatt 51
Query: 485 attactaggcaaatgcaaattaaaattaaaatattacttctcatccatga 534
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 attactagacaaatgcaaattaaaattaaaatattacttctcatccatga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_b08.g1 MSMg01no098_b08.g1 CHROMAT_FILE:
MSMg01no098_b08.g1 PHD_FILE: MSMg01no098_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:04 2005
(567 letters)
>mm_chr6_15698139_15699101
Length = 963
Score = 1038 bits (537), Expect = 0.0
Identities = 559/567 (98%), Gaps = 4/567 (0%)
Strand = Plus / Plus
Query: 1 cataaatcatgataagactgttgagttaactgagataagaaaggaaggtgttttgtctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaatcatgataagactgttgagttaactgagataagaaaggaaggtgttttgtctag 260
Query: 61 attaggtacagaggattgcaggaaggaagaaacaggaagtgggtttcgctctagagtctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaggtacagaggattgcaggaaggaagaaacaggaagtgggtttcgctctagagtctc 320
Query: 121 cctctcagatctttcaatagggtctcactctaggcaagactggccaggctagcttcaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctcagatctttcaatagggtctcactctaggcaagactggccaggctagcttcaaaa 380
Query: 181 tcatggcaaccctcctgcctcagcctctggagctcagatgtgaaccatttggtgttattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatggcaaccctcctgcctcagcctctggagctcagatgtgaaccatttggtgttattc 440
Query: 241 acgaggttcattatttggtgaggtgaaggcaggcagatgaaacaagtgctgggaacaagg 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaggttcattatttggtgaggtgaaggcaggcagatgaaacaagtgctgggaacaagg 500
Query: 301 ctaaggattttggttcaaataaatgttaattgttatgcaaggacaatgggccaccccccc 360
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 501 ctaaggattttggttcaaataaatgttaattgttatgcaaggacaatg--cc-ccccccc 557
Query: 361 ccccgcatttaaggtcctgtcatcagagggtttaaaatgacgagctgtgggtataggggc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccccgcatttaaggtcctgtcatcagagggtttaaaatgacgagctgtgggtatagggga 617
Query: 421 gaaaagacatgaagaggcttacaaccaaaagaacaaaaacaaatactccagaaaagtttc 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 618 gaaaagacatgaagaggcttacaaccaaa-gaacaaaaacaaatactccagaaaagtttc 676
Query: 481 tgttatttcagagtcaagataaaggactagttgtgattgctcgataggaaatgtggaaag 540
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgttctttcagactcaagataaaggactagttgtgattgctcgataggaaatgtggaaag 736
Query: 541 ataagctcaaatataataacagaaaat 567
|||||||||||||||||||||||||||
Sbjct: 737 ataagctcaaatataataacagaaaat 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 963
Length adjustment: 10
Effective length of query: 557
Effective length of database: 953
Effective search space: 530821
Effective search space used: 530821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
