BAC Information

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BAC

Clone NameMSMg01-098O13
Chromosome6 (Build37)
Map Location 18,482,508 - 18,482,897
singlet/doubletsinglet
Overlap genenone
Upstream geneMet, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098O13.T7 (MSMg01no098_o13.b1)MSMg01-098O13.TJ (MSMg01no098_o13.g1)
ACCAG314969AG314970
length708613
length of high quality
(start - end)
393 (44 - 436)147 (126 - 272)
definitionCHROMAT_FILE: MSMg01no098_o13.b1 PHD_FILE: MSMg01no098_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:10 2005CHROMAT_FILE: MSMg01no098_o13.g1 PHD_FILE: MSMg01no098_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCATGTCCATTTTACCTCCGTGTATTAACACCGCCTAAAATCTGTA
TCATGCTTAAGATGTAAAATGATATCCCTTGTCCCCTTTCTGTCTTAGAG
AAACAAAAAGAGATTGAAATTCACTATATATGAAGTTCCTCTTCAACATG
AGCATCTCTGCAATTTATATCTGTGAGCTGTGGTGTCCTGAGCAGCTTGG
ATCCCAGAACCTTAGCTAGGGGCAGCGAGCAAATGAAGAAAGGACGGACA
CACTAGCTCACTTACAATGTAGCTGGGATCTGATGGCATTCTCTAACGTC
TCTGGGGACCTATACCACCACAACTTGGAATCTCAGTGAGTTGATTGGGT
ACAACATGAGGGTGGGAGGGGTTGGGGTGAGCTGGGCTCCATAGAAGGCC
TCTGTAAACCCAGACACTATTGTGGATGCCAACAACTGCATGTTGACAGG
ACCTTGATATAGTTGTCTCCTGAGAAGCTCTGCCAGAGCCTGACCAGTCT
TCCTTTAGATTCACCATGAGCACCCCTTTGTACATTTACAGACTCGACTG
AACCATTTGAATCCCCTCACCACTCTCTATTACGAAACACCTTATCACTC
TTTCCCTACCCCCCTAAGCTTCCTTGCTATCACCCCCCCTTCCCAATATC
ATCCCTGC
ATAAGTGGAGCCTGGGGCGCTGTCCTCACTTAGGGAACTAAAAGGATCCC
GATTCCTGATCTTTCCAAACTTTTATCTGAATGGGTTGATCTTGCAATGC
TTTTTCTGCTCTAACGAAGATCTGGTTTTTGTCTTTGATTTGTTTATATA
ATGATACTTGATGGATTTTCGTATATTAAACCATCCCTGCCATCCCTGGC
AATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGA
TTCGGTTAGCGAAATTTTATTGAGATTTTGGGCTTCANCNCNCCCTTTTC
CCTACATAGAAAAACCCCCCACCAATTTTTGTGGGTCCCAAAAAATCCCT
CTTTTTTTTTGGGGGAAAATTTTTCTTTGGGCCTCTAGTCCAAAAAAAAA
AAAGGGGTTTCTACAAAAAAAAAANNNNNNNNNNNNNNNNNNNTTGCAGC
GCATGGTNNAGGANNTGCNCNNNNCCCCCCCCATCCCCCCAACAACATTT
CNCTTTTTTTTTCTCTTCTCNNNNNNNNNATAATTNTNNNNNNNTTATTT
ACTACAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGAA
GTNAGCTCNTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_o13.b1 MSMg01no098_o13.b1 CHROMAT_FILE:
MSMg01no098_o13.b1 PHD_FILE: MSMg01no098_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:10 2005
         (393 letters)



>mm_chr6_18482305_18483097
          Length = 793

 Score =  716 bits (370), Expect = 0.0
 Identities = 385/390 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcatgtccattttacctccgtgtattaacaccgcctaaaatctgtatcatgc 63
           ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 ggaattcctcatgtaaattttacctccgtgtattaacactgcctaaaatctgtatcatgc 263

                                                                       
Query: 64  ttaagatgtaaaatgatatcccttgtcccctttctgtcttagagaaacaaaaagagattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaagatgtaaaatgatatcccttgtcccctttctgtcttagagaaacaaaaagagattg 323

                                                                       
Query: 124 aaattcactatatatgaagttcctcttcaacatgagcatctctgcaatttatatctgtga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 aaattcactatatatgaagttcctcttcaacatgagcatctctgcaattcatatctgtga 383

                                                                       
Query: 184 gctgtggtgtcctgagcagcttggatcccagaaccttagctaggggcagcgagcaaatga 243
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctgtggtgtcctgaacagcttggatcccagaaccttagctaggggcagcgagcaaatga 443

                                                                       
Query: 244 agaaaggacggacacactagctcacttacaatgtagctgggatctgatggcattctctaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaaaggacggacacactagctcacttacaatgtagctgggatctgatggcattctctaa 503

                                                                       
Query: 304 cgtctctggggacctataccaccacaacttggaatctcagtgagttgattgggtacaaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgtctctggggacctataccaccacaacttggaatctcagtgagttgattgggtacaaca 563

                                         
Query: 364 tgagggtgggaggggttggggtgagctggg 393
           ||||||||||||||||||||||||||||||
Sbjct: 564 tgagggtgggaggggttggggtgagctggg 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)