BAC Information

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BAC

Clone NameMSMg01-098P11
Chromosome6 (Build37)
Map Location 57,746,615 - 57,746,991
singlet/doubletsinglet
Overlap geneAW146242
Upstream geneFkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2
Downstream geneV1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098P11.T7 (MSMg01no098_p11.b1)MSMg01-098P11.TJ (MSMg01no098_p11.g1)
ACCAG315012AG315013
length686773
length of high quality
(start - end)
566 (49 - 614)384 (135 - 518)
definitionCHROMAT_FILE: MSMg01no098_p11.b1 PHD_FILE: MSMg01no098_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:14 2005CHROMAT_FILE: MSMg01no098_p11.g1 PHD_FILE: MSMg01no098_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTCCTATTCGGAGAGGATCCGCGGAATTCTATCCCCTCCTGTTCCCAA
AACTCCCCAAGCACCTCTGAATGTGTCACTGTGGGTCTCTGTATCTGTTT
CCATCCAGTGCTCAATGAAGCCTGTCAGGAGACAGTTATGCTAGGCTGCC
ATCTGTAAGCATAGCAGAGTACTATTAATACTGTCAGGAGTTGTTTCTGG
GATATATCTCAAGTTGGGCCACTCTTTAGCTGGCTAATCTTTAGTTCTTA
ATCTTTGCTCCATCTTCATCCCTGCCAACTTGTAGGCAATACTAAATTGG
GATTGAACGTTTTGTGAAAGGATTGATGTTCCCTTCTTTTTACTGGAATT
TCTGCAGGTTTCAGAAGGTGGCCAGTTCAGTCTAGATAGCCACTTCTGTT
ATGAGTCTCAGCTAGAGACACTGATATAGACACCCTGGGGCTCTCCCTTG
TCCCAGGTATCCAGGTACTCCCAAGATTCCTCCCAATGTTTAACATTCAC
ACTCACAGTCCTTTCCCACACCCCTCCTCCTATAACTGATTCCCTTACCT
GTCCACATTTTCATTGTAGCTCCCACACAGATCCTCCCTCCATCCAACTA
TTTTGTTTCTATATCTGAGTGAGTTTCACTCATGCTCCCTTGGGACTTCC
CTATTACTTAGTATCTTTTGGACTGTGTATTGTAAT
NNNNNNNNNNNNNNNAACCCNNCCCNNNCCCNCCCCCCCTCTNNNCCATT
CTCCTNNNNNTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGGAAGGAAT
ATGTAGAGAGTTCCCATCTTAAAGTGGGGGGAAAGTCAGTCCAACCTGGC
CAAGAACGTACACACCCAGCACCGTATTCAGTGAGACTTCCGAGTCACTT
TCAGACATGCTCAGGGGAGGAGAGGATCAACTCTCCTCACATATGAGAGT
GTACCTGTCCTTCCCAGAAGAGCCTTCCAGCCGCAGCTGTCTGCAGTACC
CACCATGTAACGCTGTGGAACCTCTGCCGTGTAGCCACCCACTTGCCTGA
ATCCTATCTTGAAAAAGTGCAACTTTTTCTTTTCCTTTCTTGTTGGCTCT
TTTTGGATACTGACCAAAGGCTGACTATATTTTCTGTGACATTTCCTGGG
TCACTTACTCACTCTCCAAAGTTCCTTGGCTCACCTACCTCCACTGCAGA
AGTCATAGCCTTCGCTCTCCCTCTGCTCCATCTGCCTATTCTAAGGAGGC
ACCAAGGCTTGCAATTTGCCTTCCCTGCTGTTTGTTCCCAGATACAAATG
AAATTTCTCCCTGAACTTCCTTTTTGAGTCCTTTGTAAATTAATTTCCTT
ATTATGACCACGAATCCAATAAGGAAAACTCAATTTTCTTGGTCACTTGA
ATAACCTTTGCTTACATGCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_p11.g1 MSMg01no098_p11.g1 CHROMAT_FILE:
MSMg01no098_p11.g1 PHD_FILE: MSMg01no098_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:14 2005
         (384 letters)



>mm_chr6_57746408_57747191
          Length = 784

 Score =  619 bits (320), Expect = 0.0
 Identities = 365/384 (95%), Gaps = 7/384 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacaggaaggaatatgtagagagttcccatcttaaagtggggggaaagtcagtccaa 60
           |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 208 caggacaggaaggagtatgtagagagttcccatcttaaagtgggggaaaagtcagtccaa 267

                                                                       
Query: 61  cctggccaagaacgtacacacccagcaccgtattcagtgagacttccgagtcactttcag 120
           |||||||||||||||||||||||||||||       |||||||||||||||||| |||||
Sbjct: 268 cctggccaagaacgtacacacccagcacc-------gtgagacttccgagtcaccttcag 320

                                                                       
Query: 121 acatgctcaggggaggagaggatcaactctcctcacatatgagagtgtacctgtccttcc 180
           ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 321 acatgctcaggagaggagaggatcaactcccctcacatgtgagagtgtacctgtccttcc 380

                                                                       
Query: 181 cagaagagccttccagccgcagctgtctgcagtacccaccatgtaacgctgtggaacctc 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaagagccttcctgccgcagctgtctgcagtacccaccatgtaacgctgtggaacctc 440

                                                                       
Query: 241 tgccgtgtagccacccacttgcctgaatcctatcttgaaaaagtgcaactttttcttttc 300
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tgccgtgtagctacccacttgcctgaatcctaacttgaaaaagtgcaactttttcttttc 500

                                                                       
Query: 301 ctttcttgttggctctttttggatactgaccaaaggctgactatattttctgtgacattt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ctttcttgttggctctttttggatactgaccaaaggctgactatattttctgtggcattt 560

                                   
Query: 361 cctgggtcacttactcactctcca 384
           |||||| |||| ||||||||||||
Sbjct: 561 cctgggccactcactcactctcca 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)