BAC Information

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BAC

Clone NameMSMg01-098P24
Chromosome6 (Build37)
Map Location 134,943,466 - 134,943,845
singlet/doubletsinglet
Overlap genenone
Upstream geneEtv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1
Downstream geneDdx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1, Grin2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098P24.T7 (MSMg01no098_p24.b1)MSMg01-098P24.TJ (MSMg01no098_p24.g1)
ACCAG315038AG315039
length755698
length of high quality
(start - end)
108 (33 - 140)380 (55 - 434)
definitionCHROMAT_FILE: MSMg01no098_p24.b1 PHD_FILE: MSMg01no098_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:17 2005CHROMAT_FILE: MSMg01no098_p24.g1 PHD_FILE: MSMg01no098_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCAATACGACTACTATTCAAAGAGGATCCGCGGAATTCAATGAT
ATTCTGAGCTACATAGAAGGCTTTGTCTAAAGTGCGCTCGCGCGTGTGTA
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTCCCCA
CAATACTCTTACACCCCCCACAATACTACCATAATACTAATAAACCTCAA
TTTTATCCTATTCCCCATAAACACAACACCATAACCCTTACCAATACACA
CTCTCTTTTCTTCCTTCCCTATTCTCCCACCCCCTTTTCATACCCCCCCC
CCCTTTATTCCTCTTTTCCTCCCACCTTACCCACCATATTATTTATAAAA
TCTTTTTCCCTTCCTCCCCACTCCCCTTTACCCCCCCCCTCCCCCCCCCT
TTTTTTTTTCCCCCACCCCTATCTACCCTATCCCATTTTAACACTCCCCT
TCATCTACTCCCATCATAACATTTTCTCCTCATCTCTTTCTCTAATAACT
TACCTATTCACCCTCTTCAAATATACCCAACCTCACTCTTTACCCAACCC
TTCCACTATCTATCATCCCTTTTCTTACCTAACTCCATTTCTTCTCTTCC
TAAATCCCCCATTATTCTCTAATCACATTCACTTCCTATAACACATCCAA
TCTATTTAATACCACCTTACACACATATTACTTTTAATTTCCCTCACCCC
CTCCCTTCTATTTTCTTTTCCTTATATTTAATCATACTTCTTTACATTCT
TTATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAGACCAGCTTGGGAAACTTAGTAAGAGTCTGTCAAGGGGGAAAAA
AAACCCTCTAAATAAATAAACAAATAAAACTTGGTTCTGGGTTTGAATGC
AGATTAAGAAGCACACCCAGTTTCTATGGGGTTCGTTCCACTTCCTCTAG
TGCACGGGGGTGGGGGGGGCTTTGAAGGAAGAGCTAAGGTAACTTCAAAT
AATGGTGTGATGTAGGACTGTTAAAGGGCTGAGTCAGAAGGAACAGGCGC
AGGGTGGAGGTTCGAGTTAATAGGTGATTAGGAGGGGGAGAGATGCAGGA
AGCAAAGCCAAGGAAAAATAGCTAGGTGATATCCACCCTTAGTGGCGGAT
ACTCGCCGAATTGAATCAGAATTAAAGCCAGGGCCTCATGCAGAGTTAGC
TCTCTCCTACACTGTGGGCCTCAGGGATTGAACTCAGGTCTTCAGGCTCT
GTGGCGAGTGCCTTTACCCACTGAGTTATCTCATGGGCCCAGCCCAGAGA
TTTTGAATGAGCCCTAGAAAAGAATCAGGGACCATTATACTCCACTGGAG
AACGTCTAGCAGCTTCTTCTAGGTAGGTTGGGGGATTAGTTGACTTTTCC
TTCCGGTTGTGTATGTATAACGCGGGCGCACTACCCCCTCCCTTGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_p24.g1 MSMg01no098_p24.g1 CHROMAT_FILE:
MSMg01no098_p24.g1 PHD_FILE: MSMg01no098_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:17 2005
         (380 letters)



>mm_chr6_134943266_134944045
          Length = 780

 Score =  727 bits (376), Expect = 0.0
 Identities = 379/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaccagcttgggaaacttagtaagagtctgtcaagggggaaaaaaaaccctctaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaccagcttgggaaacttagtaagagtctgtcaagggggaaaaaaaaccctctaaata 260

                                                                       
Query: 61  aataaacaaataaaacttggttctgggtttgaatgcagattaagaagcacacccagtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaacaaataaaacttggttctgggtttgaatgcagattaagaagcacacccagtttc 320

                                                                       
Query: 121 tatggggttcgttccacttcctctagtgcacgggggtggggggggctttgaaggaagagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatggggttcgttccacttcctctagtgcacgggggtggggggggctttgaaggaagagc 380

                                                                       
Query: 181 taaggtaacttcaaataatggtgtgatgtaggactgttaaagggctgagtcagaaggaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaggtaacttcaaataatggtgtgatgtaggactgttaaagggctgagtcagaaggaac 440

                                                                       
Query: 241 aggcgcagggtggaggttcgagttaataggtgattaggagggggagagatgcaggaagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcgcagggtggaggttcgagttaataggtgattaggagggggagagatgcaggaagca 500

                                                                       
Query: 301 aagccaaggaaaaatagctaggtgatatccacccttagtggcggatactcgccgaattga 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 aagccaaggaaaaatagctaggtgatatccacccttagtggtggatactcgccgaattga 560

                               
Query: 361 atcagaattaaagccagggc 380
           ||||||||||||||||||||
Sbjct: 561 atcagaattaaagccagggc 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)