BAC Information

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BAC

Clone NameMSMg01-099D19
Chromosome6 (Build37)
Map Location 147,774,241 - 147,774,483
singlet/doubletsinglet
Overlap genenone
Upstream geneArntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
Downstream geneMlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099D19.T7 (MSMg01no099_d19.b1)MSMg01-099D19.TJ (MSMg01no099_d19.g1)
ACCAG315220AG315221
length718868
length of high quality
(start - end)
304 (48 - 351)241 (139 - 379)
definitionCHROMAT_FILE: MSMg01no099_d19.b1 PHD_FILE: MSMg01no099_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:37 2005CHROMAT_FILE: MSMg01no099_d19.g1 PHD_FILE: MSMg01no099_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTACGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGACCCATACCGAAGGGCTAAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGATAG
CAGATGCTGGCGAGGATGTGGAGAAAGAAGAACACTCCTCCATTGCTGGG
GGGATTGCAAGCTGGTACAACCACTCTGGGAATCAATCTGGCAGTTCCTC
AGAACTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCA
TATACCAGAAGATGTTCCCACTGGTAATAACGACACATGCCCTACTATGT
TCATAGCAGCCCTATTTATAACAGCCACAAGCTGGCCAGAATCCACACGT
CCCCCAATAGAATGGATACAGAACACGTGGTACATTTATCCAATGTAGTA
TTATTCTTTTATTACAACCAATGAATTCACGACCATCTTGTACAAATGCA
TATTTCCGGAGGCCATCATTTCGAGTGAGGTAACCTCTTTTTCTCCCAAC
TCCCTTCGATTTTCTTTCCCCGGATAATCCGGACTATTCAGCTCTTCTAA
ATCTCAGTAATACCCCTCCGATACCTTCCTTCCTAAGACATCCATACACT
CTCTTCCTTTACCTCCCG
CTCTTTCCTCTTTTCCCTNNNATTTTTTCTTTCTTTACCTCCCTTCCTCC
CCTTGTTCCNNNNCTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATTCTCTCAGTGA
TGAGGGACAAAGGAGGTGTTATTCCAACTAGAGAAACAATGGTTACCAAA
GAGTGTCTTTTTACAAAATTATTTTTTATGTCTGAAATTTTGAGGGAATT
TTTTTGGTTATGAAAAAAGAAAAGTGGAAAAAAAATCAAATCTCATGATT
CCCATGTGGTTGTTAACAACATTTGGGCTAGTATTTAACAATCTAAAAAT
CTTAATTATCTTACCAGATTTTTTAGCCAGAATAATTTCTGGTACTCCTG
AGCTTCAGCCAAATTCATTTCTGTCACCATATTTTCTCTTTCCGTGTTGT
GATGGTAATTAATACTGTTTTTTAATTACAGGTTTACATTAATTTAATTT
GTTTTGAAGTTTCTTGAGGGTTGTTAGTAGTAGTTTTTGTCTTTTTTAAA
TAACCGAATGTCTAACACCTTGGCTCAATTATATGTCTTGCGCCCTACCC
CCTCCCCATTTAATCTGGTGTTGACATCTCATTATGTTTTCTACGGACGT
CTATTATCAACCACATCTGTGTATACTCTTACTTAAGCGTTACCGCTTTG
TCTATGCGCCCCTTTGCTCTTTTGGTATTTACTCTTGCCCATGTTTTTCC
AAGGAAATTTTTCCCCCTTATTTTTTTTTTTTTCTCATGAGGTTCTTTAC
ACCTTCTCGCGATATAAAATTTTTTCCCCCCTTTCTCATCTTATTTTTTC
CTCGCACCTACTATGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_d19.g1 MSMg01no099_d19.g1 CHROMAT_FILE:
MSMg01no099_d19.g1 PHD_FILE: MSMg01no099_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:37 2005
         (241 letters)



>mm_chr6_147774041_147774683
          Length = 643

 Score =  408 bits (211), Expect = e-118
 Identities = 235/243 (96%), Gaps = 2/243 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctcagtgatgagggacaaaggaggtgttattccaactagagaaacaatggttacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttctctcagtgatgagggacaaaggaggtgttattccaactagagaaacaatggttacca 384

                                                                       
Query: 61  aagagtgtctttttacaaaattattttttatgtctgaaattttgagggaatttttttggt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 383 aagagtgtctttttacaaaattattttttatgtctgaaactttgagggaatttttttggc 324

                                                                       
Query: 121 tatgaaaaaagaaaagtggaaaaaaaa-tcaaatctcatgattcccatgtggttgttaac 179
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 323 tatgaaaaaagaaaagtggaaaaaaaaatcaaatctcatgattcccatgtggttgttaac 264

                                                                       
Query: 180 aacatttgggctagtatttaacaatctaaaaatcttaattatcttaccagatttttt-ag 238
           ||||| ||||||||||||||||||||||||||||  ||||||||||| ||||||||| ||
Sbjct: 263 aacatctgggctagtatttaacaatctaaaaatccaaattatcttactagatttttttag 204

              
Query: 239 cca 241
           |||
Sbjct: 203 cca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 643
Length adjustment: 9
Effective length of query: 232
Effective length of database: 634
Effective search space:   147088
Effective search space used:   147088
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)