Query= MSMg01no099_i24.b1 MSMg01no099_i24.b1 CHROMAT_FILE:
MSMg01no099_i24.b1 PHD_FILE: MSMg01no099_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:06 2005
(678 letters)
>mm_chr6_63435460_63436538
Length = 1079
Score = 1212 bits (627), Expect = 0.0
Identities = 663/677 (97%), Gaps = 6/677 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgcagcttgctcgccaataatttacttcctccaataaggctgcagtatctctc 64
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 gaattcttacagcttgct-gccaataatttacttcctccaataaggctgcagtatctctc 951
Query: 65 gacacagggtcaaaaacttgggaccacctgttcaataccagtacctgtagttgacagtct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 gacacagggtcaaaaacttgggaccacctgttcaataccagtacctgtagttgacagtct 891
Query: 125 tcagtcaaccctcgttccaggaaatctagttcgtatgtttaataggatgcacttaactga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tcagtcaaccctcgttccaggaaatctagttcgtatgtttaataggatgcacttaactga 831
Query: 185 ggtttacatgtatgctttggccccgagcttcccagcatggtagttagggagccagtgatc 244
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 830 ggtttacatttatgctttggccctgagcttcccagcatggtagttagggagccagtgatc 771
Query: 245 cacaggcagatgcagacagtctgaattctagtgcttagtcctttaaacatatagaagtct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cacaggcagatgcagacagtctgaattctagtgcttagtcctttaaacatatagaagtct 711
Query: 305 ctttaagctttttagccagtcattgcacacccatatttgaaataaagttattaagccaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ctttaagctttttagccagtcattgcacacccatatttgaaataaagttattaagccaga 651
Query: 365 aggtaaggatctgacagccctgaatagtgatcaccacctagcgctgaacatagtatccat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aggtaaggatctgacagccctgaatagtgatcaccacctagcgctgaacatagtatccat 591
Query: 425 ggctctgaacgtgggtcctgataattccccatccccc---agctatttttccatcacata 481
|||||||||| ||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 590 ggctctgaacatgggtcctgataattcccc--ccccccccagctatttttccattacata 533
Query: 482 tttgaaatccagctcgtcatcctgaaaggctatcctagcaaagttcccttatattcatag 541
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 532 tttgaaatccagctcgtcatcctgaaaggctatcctagcaaagttcccttttattcatag 473
Query: 542 atggatgcccagtttccaaatcatcctcagaaaatgctgtgatcagtgagttactcatct 601
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 472 atggatgcccagtttccaaatcatcctcagaaaatgccgtgatcagtgagttactcatct 413
Query: 602 aagatttgaaacatgaagaaatggaactgttggttgttaaaagtaccttctaatccataa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aagatttgaaacatgaagaaatggaactgttggttgttaaaagtaccttctaatccataa 353
Query: 662 ttctgacactgagtgaa 678
|||||| ||||||||||
Sbjct: 352 ttctgaaactgagtgaa 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1079
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1069
Effective search space: 714092
Effective search space used: 714092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_i24.g1 MSMg01no099_i24.g1 CHROMAT_FILE:
MSMg01no099_i24.g1 PHD_FILE: MSMg01no099_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:06 2005
(420 letters)
>mm_chr6_63375109_63375928
Length = 820
Score = 692 bits (358), Expect = 0.0
Identities = 403/418 (96%)
Strand = Plus / Plus
Query: 3 tattgaaattaataaaggcttttaacttgagacagagataagcaaatatgagaaaatttg 62
|||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 203 tattgaaattaataaatgcctttaacttgagacatagatgagcaaatatgagaaaatttg 262
Query: 63 tgagaaataaaacttatgttaatgtatcaagacagtcttactaagtttaaaatatactaa 122
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgagaaacaaaacttatgttaatgtatcaagacagtcttactaagtttaaaatatactaa 322
Query: 123 tttacatgtatgagagagtaaaaagaaatgtcttaaataagaagtcagtttgcaatcaac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttacatgtatgagagagtaaaaagaaatgtcttaaataagaagtcagtttgcaatcaac 382
Query: 183 attttaaatgagaatctcactttgctataaagataatactattccacccagggtgttaga 242
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
Sbjct: 383 attttaaatgagaatctcactttgatataaagataatactattccacccagggcgttaca 442
Query: 243 tatatattaaccaaaccagagagaatgttttttatcttttaaatattactgatagtacag 302
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 443 catatattaaccaaaccagagagaatggtttttatcttttaaatattagtgatagtacag 502
Query: 303 tatactttgaatttcaagaatgtaagaaaccaagacttttattaatgctattacagatgt 362
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtattttgaatttcaagaatgtaagaaaccaagacttttattaatgctattacagatgg 562
Query: 363 ttctgtaattagtcttttgaaagtgaatatctacattctagttgtttctctactaaat 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 563 ttctgtaattagtcttttgaaagtgaatatctacaatctagttgtttctctactaaat 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
