BAC Information

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BAC

Clone NameMSMg01-099L11
Chromosome6 (Build37)
Map Location 119,905,822 - 119,906,350
singlet/doubletsinglet
Overlap geneWnk1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52
Downstream geneEG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099L11.T7 (MSMg01no099_l11.b1)MSMg01-099L11.TJ (MSMg01no099_l11.g1)
ACCAG315588AG315589
length700739
length of high quality
(start - end)
532 (47 - 578)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no099_l11.b1 PHD_FILE: MSMg01no099_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:19 2005CHROMAT_FILE: MSMg01no099_l11.g1 PHD_FILE: MSMg01no099_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAAGCTACCCCTAATACCTTGTCCTGGGGGCGGGGGGGACGGA
CGGAGGGAGACCAGTTTAGTTTAGTCAACATAGCAAAAATCCCTCTCTCA
AAAGAATCTCAAACATTGTATTTTATTCTTAACAGCAGGGAATACAGCCA
ACTGTTCCTTCTCAACAGGCAGTACAGTATTCACTTCCACAAGCAGCATC
TTCCAGTGAAGGTACTACTGCACAGCCAGTGAGTCAGCCTCAAGTGTCAG
CTGGAACACAGGTAAACTCAAATTTCTGAAGAGATTCTTCAAATGATATC
TGTGTACTTTGTCCCTTCCTACAGGTTTTACTGACTCTTCAGATAGTGAA
AGATCTGTTAGAATGGAATAAAAATCATTGCCATTATATACTTTTATTTA
TTGTAAATCAGTATATGCAGATAGCAAAGACAATGAAATATGAAATATTA
GGTTTATAGGTGTAAAGTATTGAAACTAATGAGCTAAATGGAGATGCTTT
CGTAACTGAACCTGTGACATTCTCTAGAAAATGTCAGCTGTATTTGATAT
TCCAGATTTGCCACTATGTTTTATTTCCATGTAAACTTTCGTATTTTCTC
CCTCACTACCTACAGATACTACCTTATTGCATTGACTAGTTTTCTCATAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGCCAAAGCAGTCCTCA
AGCTCTTTTTCTTTTTTTTTCTTTTTGAGACAGGGTTTCTCTATGTAGCC
TTGGCTGTCCTGAAACTTGTTCTGTAGACCAGGCTGTCCTCCAAGTCATA
AAGATCCACCTGCCCCTGCCTCCTGAGTGCTGGAATCAAAGGTGGGCACC
ACCACTGTCCAGCTCAAGTTGGGTTTTTGTTGTTGTCGTCACTGCTTTGT
GATTTTTTTTTTTTAATTTATATGTGTGATTGTTTTGCACCATGTACAGG
AACAAGTCTTAAAAAGGCTAAGAAAGTACAACCAGAGTTCTAAAGTAAAA
AGGATAAATAAAAAAAATACAAGAACAAAGATGTGTTAAATCTAAGACGG
GATGGAAAAGGAATGCCTCTTTTTGTTTATATACATGGACTCAGCCCATA
AAGATAAATGTATAAATGAAATTAACCTGGCTTTCCTCCTGTATAACTCG
GTACTGCCCCTTCCAAATGGTGATTTTGGAAGCTTCATCTTTTCTCCGGC
CTGTTTCTTTCTTTAACTCCCGGCTTCTTGAAGGTCTTCGACACCATTTC
ATTGGAGAACCCCTACCTTGCTCTCCCTTTACTTCTCAATTCTTTTCCTC
ACAAGCATCCGTTTTCCCCCTCAAAACTTCCCCTTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_l11.b1 MSMg01no099_l11.b1 CHROMAT_FILE:
MSMg01no099_l11.b1 PHD_FILE: MSMg01no099_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:19 2005
         (532 letters)



>mm_chr6_119905618_119906550
          Length = 933

 Score =  994 bits (514), Expect = 0.0
 Identities = 525/532 (98%), Gaps = 7/532 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaagctacccc----taataccttgtcctgggggcgggggggacggacggagg 60
           ||||||||||||||   |    ||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaattccaaagcta---cataataataccttgtcctgggggcgggggggacggacggagg 677

                                                                       
Query: 61  gagaccagtttagtttagtcaacatagcaaaaatccctctctcaaaagaatctcaaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gagaccagtttagtttagtcaacatagcaaaaatccctctctcaaaagaatctcaaacat 617

                                                                       
Query: 121 tgtattttattcttaacagcagggaatacagccaactgttccttctcaacaggcagtaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtattttattcttaacagcagggaatacagccaactgttccttctcaacaggcagtaca 557

                                                                       
Query: 181 gtattcacttccacaagcagcatcttccagtgaaggtactactgcacagccagtgagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtattcacttccacaagcagcatcttccagtgaaggtactactgcacagccagtgagtca 497

                                                                       
Query: 241 gcctcaagtgtcagctggaacacaggtaaactcaaatttctgaagagattcttcaaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcctcaagtgtcagctggaacacaggtaaactcaaatttctgaagagattcttcaaatga 437

                                                                       
Query: 301 tatctgtgtactttgtcccttcctacaggttttactgactcttcagatagtgaaagatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tatctgtgtactttgtcccttcctacaggttttactgactcttcagatagtgaaagatct 377

                                                                       
Query: 361 gttagaatggaataaaaatcattgccattatatacttttatttattgtaaatcagtatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gttagaatggaataaaaatcattgccattatatacttttatttattgtaaatcagtatat 317

                                                                       
Query: 421 gcagatagcaaagacaatgaaatatgaaatattaggtttataggtgtaaagtattgaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcagatagcaaagacaatgaaatatgaaatattaggtttataggtgtaaagtattgaaac 257

                                                               
Query: 481 taatgagctaaatggagatgctttcgtaactgaacctgtgacattctctaga 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 taatgagctaaatggagatgctttcgtaactgaacctgtgacattctctaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space:   481806
Effective search space used:   481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)