BAC Information

Click to search

BAC

Clone NameMSMg01-100D14
Chromosome6 (Build37)
Map Location 111,143,667 - 111,144,187
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100D14.T7 (MSMg01no100_d14.b1)MSMg01-100D14.TJ (MSMg01no100_d14.g1)
ACCAG315977AG315978
length692696
length of high quality
(start - end)
536 (66 - 601)594 (73 - 666)
definitionCHROMAT_FILE: MSMg01no100_d14.b1 PHD_FILE: MSMg01no100_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:01 2005CHROMAT_FILE: MSMg01no100_d14.g1 PHD_FILE: MSMg01no100_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGTTTCCAATAGCTGATTAGAGCTCCATTGTGTAAATGATCACAT
TTTCTGTATCCATTTCTCTATTGAGGGATATCTGGGTTCTTTCCAGCTTC
TGGCTATTATAAATACGGCTGCTATGAACATAGTGGAGCATGTGTCTTAT
TACAAGTTGGAACATCTTCTAGGTATATGCCCAGGAGAGGCATTGTTGGA
TCCTTCAGTAGTACTATGCCCAATTTTCTGGAGTAAAAAGACACTGATGG
TCTTCTGCATTACTGGATCCTGCATGATACAATATTGACTCACTAGGCAG
ATGTACTCACTGTTGCAATAACTGCAAGAGTGTTTATGGGAATAACAAAC
TGACTTATTTTATTTGATGCCTGTTCCCTGGAAGAGAATTCAATCCTGAT
TTTGTGTGTTCAAAGTCTATGGCTAAGAAAGTGATACACAGCCTTCCTGC
ATAAGATTTCACTAATTGAAACCAATTAAAATTTCTGTTGGAGAACAAAA
AGGAATTCCCAGGCTTTTACCTGGTGGAGGAGTACCTATTAGTTGATTGT
TGTTGCAGGATGTAGAATCAACTTCATTTGGGAGTACGACTACCAGTATG
TTAGTCATGCACTAGGGATGATATTACACCCATGGCCATATG
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAGATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGTTAAGATCA
AAAAATCAGGTGACAGCAGATGCTGGCGAGGACGTGGAGAAAGGGGAACA
CTCCTCCATTGTTGGTAGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAG
AACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAATACTACTCAGCTATTTAAAAAAATGAATTT
ATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGA
AGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTG
GATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_d14.b1 MSMg01no100_d14.b1 CHROMAT_FILE:
MSMg01no100_d14.b1 PHD_FILE: MSMg01no100_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:01 2005
         (536 letters)



>mm_chr6_111143252_111144187
          Length = 936

 Score =  969 bits (501), Expect = 0.0
 Identities = 516/521 (99%), Gaps = 1/521 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  attgtgtaaatg-atcacattttctgtatccatttctctattgagggatatctgggttct 75
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 attgtgtaaatgtatcacattttctgtatccatttctctattgagggatatctgggttct 877

                                                                       
Query: 76  ttccagcttctggctattataaatacggctgctatgaacatagtggagcatgtgtcttat 135
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ttctagcttctggctattataaatacggctgctatgaacatagtggagcatgtgtcttat 817

                                                                       
Query: 136 tacaagttggaacatcttctaggtatatgcccaggagaggcattgttggatccttcagta 195
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 816 tacaagttggaacatcttctaggtatatgcccaggagaggcattgttggatcctccagta 757

                                                                       
Query: 196 gtactatgcccaattttctggagtaaaaagacactgatggtcttctgcattactggatcc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gtactatgcccaattttctggagtaaaaagacactgatggtcttctgcattactggatcc 697

                                                                       
Query: 256 tgcatgatacaatattgactcactaggcagatgtactcactgttgcaataactgcaagag 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tgcatgatacaatattgactcactaggcagatgtactcactgttgcaataactgcaagag 637

                                                                       
Query: 316 tgtttatgggaataacaaactgacttattttatttgatgcctgttccctggaagagaatt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgtttatgggaataacaaactgacttattttatttgatgcctgttccctggaagagaatt 577

                                                                       
Query: 376 caatcctgattttgtgtgttcaaagtctatggctaagaaagtgatacacagccttcctgc 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 caatcctgattttgtgtgttcaaagtctatggctaagaaagtgatacacagccttcctgc 517

                                                                       
Query: 436 ataagatttcactaattgaaaccaattaaaatttctgttggagaacaaaaaggaattccc 495
           | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 516 aaaagatttcactaattgaaaccaattaaactttctgttggagaacaaaaaggaattccc 457

                                                    
Query: 496 aggcttttacctggtggaggagtacctattagttgattgtt 536
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aggcttttacctggtggaggagtacctattagttgattgtt 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)