BAC Information

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BAC

Clone NameMSMg01-100F08
Chromosome6 (Build37)
Map Location 138,363,593 - 138,363,821
singlet/doubletsinglet
Overlap geneLmo3
Upstream genePtpro, Eps8, Strap, Dera, 9830102E05Rik, Mgst1
Downstream geneIgbp1b, EG668196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100F08.T7 (MSMg01no100_f08.b1)MSMg01-100F08.TJ (MSMg01no100_f08.g1)
ACCAG316061AG316062
length705713
length of high quality
(start - end)
196 (78 - 273)231 (83 - 313)
definitionCHROMAT_FILE: MSMg01no100_f08.b1 PHD_FILE: MSMg01no100_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:10 2005CHROMAT_FILE: MSMg01no100_f08.g1 PHD_FILE: MSMg01no100_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACTTGCTCTAGTGTGAAGAAACAATGTAATTCTTTTCTTGTTTT
TACAATTTTTTGTTCGATATTTTCTTCATTTACATTTCAAATGCTATCCC
GAAAGTCCCCTATACCCACCCCAGTCCCTGCTCCCCAACCCACCAACTCC
TGCTTCCTGCCCCTGACATTCCCCTGTACTGAGGCATATAATCTTTGCCA
GACTAAGGCCCTCTTCTCCCAGTGATGCAAGGCTACTCCATCTACATATA
CCGCTAGAGACACGACTACTGCGGGCACTCGTTAGCTCATATTGCTGATC
CACCTATAGGGTTACAGACCCCTTCAGCTCCTTGGCTACTTTCTCTACCT
CCTCCATTGCCCCCCCTGTGTTCCATCCAATAGAGGACTGCGAGCATCCA
CTCCAGAGACTGCCCCACCCAGCGATCCATATCATAATCAGCCACGACCA
ACCGCAGACACTATTGCCTAACGCAGCAAGACTTTGCTACCCTGACCCCT
GACACAGCTGTCCCCTGCCGACCTATGCCCGACCCTGCCAAACACCATGC
AATTCCACCCCTAGAAGCTCCATTAATTTACCTTTAACCCCTCCACACAT
GCCATCCCCCTTTTTTTTAATTGAAAACCCTTCCCATATTTTGGCCACCC
CTCGA
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTACTAAAAGAATTCGTGTTGTAAGTTAACTCTGATTAGTTTG
CCACCATAATGAGGGAAGCCCTGGCTCTTGAGAGTCACCTTCCATTGTTG
GCACCTTGCGTGCTTCTGAGCTCTGGGAAGTAGTAACAAGTGCTTATAAT
TAGCCAGGAGGCTGTAGGCACAAGCCAGAGCAATACTTCCAGGGGAGAGC
ACAATGTGATAAACCACACTGGCTTCGCCCTTATACAACCACCATTAATC
AAAAGACATATCTGTATTTGTATAAAAGTCTGACTTTAAGTAGCTGAATT
ACAGATTATTTATTCCCCCCCCCCCCATTCCCTAAGAACCACCTCTCAGA
ATGGCCAAGATGCCCGGTTAGAGAGATGCTACCAATTGATAAATTTTGTG
TCATACGGAAAACGATTCATAATAAATAGCTTACTGCCAGGCTCGAAAAA
CAATGATTAATTGTATCACATATGACAGCCCAAATGATGCCCTATATTAT
TTCTCTAATTTGAAAGATCCCACTTTACTACGATAATTCATTTGCAGGTA
AGCCATGTTACTAAGTTCCCTGCAAAGAAAATACCCCCCTCTTCCAGAAT
ATTTCTTGTGTTTGACACACCCACGCCCAGGTTTTGTATCATTACCACAC
TGGCTCCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_f08.g1 MSMg01no100_f08.g1 CHROMAT_FILE:
MSMg01no100_f08.g1 PHD_FILE: MSMg01no100_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:10 2005
         (231 letters)



>mm_chr6_138363393_138364023
          Length = 631

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaactctgattagtttgccaccataatgagggaagccctggctcttgagagtcaccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaactctgattagtttgccaccataatgagggaagccctggctcttgagagtcaccttc 260

                                                                       
Query: 61  cattgttggcaccttgcgtgcttctgagctctgggaagtagtaacaagtgcttataatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattgttggcaccttgcgtgcttctgagctctgggaagtagtaacaagtgcttataatta 320

                                                                       
Query: 121 gccaggaggctgtaggcacaagccagagcaatacttccaggggagagcacaatgtgataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaggaggctgtaggcacaagccagagcaatacttccaggggagagcacaatgtgataa 380

                                                            
Query: 181 accacactggcttcgcccttatacaaccaccattaatcaaaagacatat 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accacactggcttcgcccttatacaaccaccattaatcaaaagacatat 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)