BAC Information

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BAC

Clone NameMSMg01-100K03
Chromosome6 (Build37)
Map Location 14,948,752 - 14,949,092
singlet/doubletsinglet
Overlap geneFoxp2
Upstream geneLOC100041043, LOC100040513, LOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100K03.T7 (MSMg01no100_k03.b1)MSMg01-100K03.TJ (MSMg01no100_k03.g1)
ACCAG316279AG316280
length703705
length of high quality
(start - end)
490 (44 - 533)581 (72 - 652)
definitionCHROMAT_FILE: MSMg01no100_k03.b1 PHD_FILE: MSMg01no100_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:33 2005CHROMAT_FILE: MSMg01no100_k03.g1 PHD_FILE: MSMg01no100_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGG
AATTCCATTGTTATCCAGAGACACAGCGAGAAAGCAACTCTTATAAAGGC
AAACATTTTATTGGGCTGGCTTATTGTCACAGCAGAAAGCCTGACAGCAT
ACAGGCAGGCATGGTAGAGCCAAGAGTCCTACAGCATGATCTGAAGTCAA
CCAGTAAGTGACTGGACTCCACACTGGGCAGAGCTTTAGTATAGGAGCCC
TGAAAACCTGCCTACAGAGACACAATTCTTTCAACAAGGCCAAACCCACT
CCAACAGAGTCACACTACCTATTAGTGCCACTCCCTATGGGCCAAACATT
TAAACACATGAGTCTGTGTGGACCAAACCCACTCAACCCCCCCACCCCCA
AGAGACTTTTAGTGTTAAAATCTTGTCATTCAATTCTGAAAATAAGCTGA
AAATACATGATCTAAATCTAAGTGTTTTGTCTTTTATGATGAATATATAC
TTAGGTTTAGGCTAAGGGACTCCATCCTTCATTTTAACAGTGCGGGTTTG
TTGTTGCTTGTTTGCTTGCTTGCTCTTTGGACTTTAAAAAAAAACACTCA
CTTTAGTGTCTGAGTAGAAGCTTCCAGTAAGACATTCTCAGTATTTAACA
GCCACTAGACCCGAGTTTAAAGGAAATAGCCAAGAGACATGTGCTACTGC
CCT
AATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AACCAACCCTGAGATTCCACCTCTCACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGAGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGGAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATATTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACAACTACACCATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGACATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCCAAACCTAGGATACCCAAGATATAAAGATACAATTTCCTAA
ACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_k03.b1 MSMg01no100_k03.b1 CHROMAT_FILE:
MSMg01no100_k03.b1 PHD_FILE: MSMg01no100_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:33 2005
         (490 letters)



>mm_chr6_14948203_14949092
          Length = 890

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 150 gaagtcaaccagtaagtgactggactccacactgggcagagctttagtataggagccctg 209
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 890 gaagtcaaccagtaagtgactggactccacactgggcagagcttgagtataggagccctg 831

                                                                       
Query: 210 aaaacctgcctacagagacacaattctttcaacaaggccaaacccactccaacagagtca 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 aaaacctgcctacagagacacaattctttcaacaaggccaaacccactccaacagagtca 771

                                                                       
Query: 270 cactacctattagtgccactccctatgggccaaacatttaaacacatgagtctgtgtgga 329
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cactacctaatagtgccactccctatgggccaaacatttaaacacatgagtctgtgtgga 711

                                                                       
Query: 330 ccaaacccactcaacccccccacccccaagagacttttagtgttaaaatcttgtcattca 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ccaaacccactcaacccccccacccccaagagacttttagtgttaaaatcttgtcattca 651

                                                                       
Query: 390 attctgaaaataagctgaaaatacatgatctaaatctaagtgttttgtcttttatgatga 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 attctgaaaataagctgaaaatacatgatctaaatctaagtgttttgtcttttatgatga 591

                                                    
Query: 450 atatatacttaggtttaggctaagggactccatccttcatt 490
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atatatacttaggtttaggctaagggactccatccttcatt 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)