ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTACATTATACCAAAATTGTTATAATTTAAAGGGAAATTACTATAAT
TTGAAGATGAAGAGTAACGATACTATTGTGGTATAATATCAGTAGACATC
ATATATCACAAACAGGATTAAGCAAAAATAATCGTTTTAGTGGCTCAAGC
ATTTTAAATTTCTATATAGAACAAGCATGGTTGGGTATGTCATGTTTCTC
TGATTTTAGGTATTACTGTAGATTGGATGGAAGGGCAAATTTCTATAATG
TTGGAAGCATGAAAAGCAAGTCTGTGACTCACAGCAGCAAGGGCAAGATT
ATTCTCAGGGCAAAGAAAACAGGAAGCTAAAACAACAAGAGGCAACATGC
ATAACTAATAAGCAGAAGATTCTAGATTCTGCTGTCGTCATGGAAGTCTT
ATATACTGAAGGAGTTGTTGAGGAAAGAGGGAGCTGTTTGGGGGAGCTAC
TCACTTGGAGAAAGGGTTCTGACAGTTAATTTTCTATCCTTTATAACACA
CTTCAATATTAATGAGGGCAATGAACTTTCCATAGTATTAGCAGAAATTC
CTAAAATTGGGAACTGTGTGCTGTTAGCAGCATCTTCAGACTAGGTCATA
GTAACACCTGTGAGAAACCATTTTATATGAGATGAAGATATATGAGGGTT
ATTTTAATATTATTACTTTTTTTTTTTTTTACAATCTAGA

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATGCTTGTACAATCACTCTGGAAATCAGTCTG
GAGTTTCCTCAGAAAATTGTACATAGCACTACCAGAGGATCGCGCAATAC
CTCTCCTGGGCATATATCCAGAAGATTTTCCAACTAGTAAGAATGACACA
TGCTCCACTATGTTCATAACAGCCTTACCTGTAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGATGAATGGATACAGAAAATGTGGCACA
TTTACACAATGGAGTACTACTCTTCCATTAAAAAGAATGAATTTATGTAA
TTCCTAGGCAAATGGATGCCTCTGGATGGCATCATCCTGACTGAGGTAAC
CTAATCATAAAAGGACTCACATGATATGTACTCACTGACAAGTGGATATT
TGCACAGAAACTTACAATACCCAAGACACAAGATACATTTGGCAAAACAC
ATGAAACTCAATAAGAACGAAAAAGAAAGTGTGGATACTTTGCACCGTCT
CAGAATTGGAAACTAAACACCCATGGAAGGCGTTACAGAGAAAAAGTTTT
GGCTTGGGAACGAAAGGATGGATCATTCAGAAAGAGCCCTACCTGGGGAT
CCATCCCATAATCATCCTCCAAATGCTGACCCTATTGCTCACACTTACCA
AGATTTTGTTGAAAAAACCCGAAATACCTTTCT

Query= MSMg01no101_h18.b1 MSMg01no101_h18.b1 CHROMAT_FILE:
MSMg01no101_h18.b1 PHD_FILE: MSMg01no101_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:42 2005
         (563 letters)



>mm_chr6_104514127_104515089
          Length = 963

 Score = 1042 bits (539), Expect = 0.0
 Identities = 557/563 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttataatttaaagggaaattactataatttgaagatgaagagtaacgatactattgtgg 60
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gttataatttaaagggaaattattataatttgaagatgaagagtaaagatactattgtgg 260

                                                                       
Query: 61  tataatatcagtagacatcatatatcacaaacaggattaagcaaaaataatcgttttagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataatatcagtagacatcatatatcacaaacaggattaagcaaaaataatcgttttagt 320

                                                                       
Query: 121 ggctcaagcattttaaatttctatatagaacaagcatggttgggtatgtcatgtttctct 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctcaagcattttaaatttctatgtagaacaagcatggttgggtatgtcatgtttctct 380

                                                                       
Query: 181 gattttaggtattactgtagattggatggaagggcaaatttctataatgttggaagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattttaggtattactgtagattggatggaagggcaaatttctataatgttggaagcatg 440

                                                                       
Query: 241 aaaagcaagtctgtgactcacagcagcaagggcaagattattctcagggcaaagaaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagcaagtctgtgactcacagcagcaagggcaagattattctcagggcaaagaaaaca 500

                                                                       
Query: 301 ggaagctaaaacaacaagaggcaacatgcataactaataagcagaagattctagattctg 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagctaaaacaacaggaggcaacatgcataactaataagcagaagattctagattctg 560

                                                                       
Query: 361 ctgtcgtcatggaagtcttatatactgaaggagttgttgaggaaagagggagctgtttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtcgtcatggaagtcttatatactgaaggagttgttgaggaaagagggagctgtttgg 620

                                                                       
Query: 421 gggagctactcacttggagaaagggttctgacagttaattttctatcctttataacacac 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 gggagctactcacttggagaaagggttctgacagttagttttctatcctttataacacac 680

                                                                       
Query: 481 ttcaatattaatgagggcaatgaactttccatagtattagcagaaattcctaaaattggg 540
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 ttcaatattaatgagggcaatgaactttccatagtattagcagaaattactaaaattggg 740

                                  
Query: 541 aactgtgtgctgttagcagcatc 563
           |||||||||||||||||||||||
Sbjct: 741 aactgtgtgctgttagcagcatc 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)