CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGATCCGCGGAAT
TCCATCTTGGGTTCCCAAACTTTAAGACTAATATCCACTTATCAGTGAGT
GCATACCTTGTGTGTTCTTTTCTGACTGAGTGACCTCATTCAGGGTATTT
CCAAGTTCCATCCATTTGTCTACAAATTTCATGAATTCATTGTTTTTAAT
AGCTGAGTAGTATTCCATTGGGTAAATATATCCATATTTTCTGTATCCAT
TCTTCTCTTGAGAGATCTCTGGGTTGTTTCCAGCTTTTGGTTATTATAAA
TATGATTGCTATGAACATAATGGAGCATGTGTCCTTATTACATGTTGGAG
CATCTTCTGGGTATATGCCCAGGAGTGTTTATAAATTATTACTTAGTTCA
AATTTTTGACTGCTACATAAAATATAAAAAGTGGTATAAGTTAATAGGGT
GTGAGGTGATAATTCAATGCATTTTACTATATATATTTACTAATTCTTAT
ACGTTTAAATTAAAATAGAAGTATATTATCTTACTATTTGTTAATTTTAT
CATACTGGCTTTCATTGCCTCTTTGTATTTCCAAAGCTTATACTTATTTT
GCTTTTTCTGCAGTTATACTGTTCTTTTTAGGTACATACCTATGTGACTT
CCAGGCTTGTTTGCTTGTTTGTTTGTTTGTTCGCTTGCTTAACCTGCTTT
AATACA

NNTTCATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACACCAATTTTAA
TAGGGTTATTTGATTTTTTTGGAGTCCATCTTCTTGAGTTCTTTTTATAT
ATTGGATATCTGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCC
AATCTGTTGGGGATCCTGATCTAGCTGTCTTGTGTGAGGCTATGCCAGTG
CCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATTGGATGAAATAT
AGGGCCCCTAATGAAGGAGCTAGAGAAAGTACCCAAGAAGCTAAAGGGGT
CTGCAACCTATAGGAGGATCAACAATATGAACTAACCAGTACCCCCAGAG
CTGTGTCTCTAGTTGCATATGTAGCAGAGGATGGCCTAGTTGGCCATCAA
TAGGAAGAGAGGCCCTTGGTCTTGCGAAGATCATATGTCTCAGTACAGGG
GAATACCAGGGCCAGAAAGTGGGAGTGAGTGGGTTGGGGAACATGGCGGG
GGAAGGGTATAGGGGACTTTCTGGATAACATTTAAAATATAAATGAAAAT
ATCTAATGAAAATTAAGTAAAATAAATATAAGTAAAAGACAATATCTAAT
AAAAACTCAAAAAAATATATAGCTTCTATATATT

Query= MSMg01no104_l23.b1 MSMg01no104_l23.b1 CHROMAT_FILE:
MSMg01no104_l23.b1 PHD_FILE: MSMg01no104_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:07 2005
         (562 letters)



>mm_chr6_63342338_63343299
          Length = 962

 Score =  994 bits (514), Expect = 0.0
 Identities = 548/560 (97%), Gaps = 3/560 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcttggg--ttcccaaactttaagactaatatccacttatcagtgagtgcat 62
           |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 gaattccatcttgggcattcc-aaactttaagactaatatccacttatcagtgagtgaat 262

                                                                       
Query: 63  accttgtgtgttcttttctgactgagtgacctcattcagggtatttccaagttccatcca 122
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 263 accttgtgtgttcttttctgactgagtgacctcattcaggatatttccaagttccatcca 322

                                                                       
Query: 123 tttgtctacaaatttcatgaattcattgtttttaatagctgagtagtattccattgggta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttgtctacaaatttcatgaattcattgtttttaatagctgagtagtattccattgggta 382

                                                                       
Query: 183 aatatatccatattttctgtatccattcttctcttgagagatctctgggttgtttccagc 242
           |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 383 aatatatccacattttctgtatccattcttctgttgagagatctctgggttgtttccagc 442

                                                                       
Query: 243 ttttggttattataaatatgattgctatgaacataatggagcatgtgtccttattacatg 302
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 443 ttttggatattataaatatgattgctatgcacataatggagcatgtgtccttattacatg 502

                                                                       
Query: 303 ttggagcatcttctgggtatatgcccaggagtgtttataaattattacttagttcaaatt 362
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 503 ttggagcatcttctgggtatatgcccaggagtgtttttaaattattacttagttcaaatt 562

                                                                       
Query: 363 tttgactgctacataaaatataaaaagtggtataagttaatagggtgtgaggtgataatt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttgactgctacataaaatataaaaagtggtataagttaatagggtgtgaggtgataatt 622

                                                                       
Query: 423 caatgcattttactatatatatttactaattcttatacgtttaaattaaaatagaagtat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caatgcattttactatatatatttactaattcttatacgtttaaattaaaatagaagtat 682

                                                                       
Query: 483 attatcttactatttgttaattttatcatactggctttcattgcctctttgtatttccaa 542
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 683 attatcttactatttgttaattttatcatactggttttcattgcctctttgtatttccaa 742

                               
Query: 543 agcttatacttattttgctt 562
           || |||||||||||||||||
Sbjct: 743 agtttatacttattttgctt 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)