BAC Information

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BAC

Clone NameMSMg01-104N07
Chromosome6 (Build37)
Map Location 88,180,998 - 88,181,318
singlet/doubletsinglet
Overlap genenone
Upstream geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8
Downstream geneEefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104N07.T7 (MSMg01no104_n07.b1)MSMg01-104N07.TJ (MSMg01no104_n07.g1)
ACCAG319343AG319344
length707747
length of high quality
(start - end)
328 (46 - 373)---
definitionCHROMAT_FILE: MSMg01no104_n07.b1 PHD_FILE: MSMg01no104_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:13 2005CHROMAT_FILE: MSMg01no104_n07.g1 PHD_FILE: MSMg01no104_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACTTGTTCCCCTTAAACCCTGTGTGGCAATCTGTTTAAAGTTG
TTTTATCCCACTGTTAATCACAAATTGACAAAAAAAAAAAATCGCTTCCT
GTTTGTGCTTTGTGCTGTCTGCCCTCTGTGTGTCTGGAGGAGGGTGGGGT
GAACCTGGTTAGAGACAGGAGCTGATCTTCACTGACCACCTCAAAGGCAT
GGACCATAGAGCTTCATGTGACAGCATGCCAGTTGGCTAGGGAGCAGCTG
TAACATGTGTCCTTGTAGCACGTGTTATGTCCTGGGTGAGCACTGTGAGG
CCCCGTGGTGTGGGGCATCCTGGGAAAGCCCTGTGGGAGGAGAAGCCACC
CCTATTCTACTTGTCAGAAGGTAGAGGCCCTGGCCTTCGGGGCTGCCTAA
TAATTGACTCAGTTGGGATCAGCCAGCTTTGATGGGGTGTCTTTTGCATG
AAGCTCTGGCTGGTTGTCATCATGTTGGAGAAATTTGTACATTGACATCA
CGGTCAGTCATGGGAGGAAGTGGTAATGTATATCCCCTGTCCTTGGTACA
GATCCTCTCCTGTGTTTCATGTGTCTACCGTGGGTTGCACGTGTCCCGCC
TGTCCCTGATTTCCAAGGTTGTTTTGTCATGTGTGGCTCATGCACCCACA
TCCGGTC
TGGTGTGGTAGGGTTGGTGGTTGCTGTTTCCCCAAAATTAGGTGAACTAT
ATAATTTCCCCGAAATTCATCNCAGTCCGGTGACCGTACCTTTGATTGTG
TGTCCTCTGGATGCTGCTTCTTGCACCTTCATGCTATGATGGTATGTATT
GTATTCTCTGGAACTTCCCGTGTGTGCTTTCACACTACACGGTGTCGAAC
TGAAGTGTCCTTTGTGCTATATTGTCACGCATCCCCTTCCTCCTTTCATC
GTGCCGGCTGCTGTGTTGTACTAGTTTATAACATGATGCGTAAAAGGTCC
AAACCCCTGTCATTTATGTTCACCGAGCCTCTGTATCAAGTCCACCGCCT
GTCTGCAGGACCCACCCCCCCCCGCGTCCCAGATGCCTTGGTTCACGTCT
AACATGTTTCCTCCTGTCTCCAATGTCATCCTACTTGGTATAATGCGCTC
TATTCCTGTTCTATGCTCCTCACTACTGTCTTGCCTATTCTTCCCTCGCG
TACTTCCTAGTATACAGTACCGCCCTCTCACCCCCCTGAGCAATGTGCAA
TGACCTCTATCCATACTTAAACTCCTCGTCATTCACTTTATCTTCTCTAA
AACCCACACTACCTCCGCGACTTACCCACACAATTAGCACGAATATAAGA
CCATGCCTATTACATCCTATCCCCTATTTATCTCTTCCCCCTTTCCCCTT
CCTTTTTCTTGATGCTCGCCCCCTACGCCCCTCATAGCCTTGCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_n07.b1 MSMg01no104_n07.b1 CHROMAT_FILE:
MSMg01no104_n07.b1 PHD_FILE: MSMg01no104_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:13 2005
         (328 letters)



>mm_chr6_88180794_88181518
          Length = 725

 Score =  572 bits (296), Expect = e-168
 Identities = 316/324 (97%), Gaps = 3/324 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaacttgttccccttaaaccctgtgtggcaatctgtttaaagttgttttatccc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaacttgtttcccttaaaccctgtgtggcaatctgtttaaagttgttttatccc 264

                                                                       
Query: 65  actgttaatcacaaattgacaaaaaaaaaaaatcgcttcctgtttgtgctttgtgctgtc 124
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 265 actgttaatcacaaattgacaaaaaaaaa---tcgcttcctgtttgtgctttgtgctgtc 321

                                                                       
Query: 125 tgccctctgtgtgtctggaggagggtggggtgaacctggttagagacaggagctgatctt 184
           |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 322 tgccctctgtatgtctggaggagggtggagtgaacctggttagagacaggagatgatctt 381

                                                                       
Query: 185 cactgaccacctcaaaggcatggaccatagagcttcatgtgacagcatgccagttggcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cactgaccacctcaaaggcatggaccatagagcttcatgtgacagcatgccagttggcta 441

                                                                       
Query: 245 gggagcagctgtaacatgtgtccttgtagcacgtgttatgtcctgggtgagcactgtgag 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 442 gggagcagctgtaacatgtgtccttgtagcatgtgttatgtcctgggtgagcactgtgag 501

                                   
Query: 305 gccccgtggtgtggggcatcctgg 328
           ||||||||||||||||||||||||
Sbjct: 502 gccccgtggtgtggggcatcctgg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 725
Length adjustment: 9
Effective length of query: 319
Effective length of database: 716
Effective search space:   228404
Effective search space used:   228404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)