Query= MSMg01no105_l04.b1 MSMg01no105_l04.b1 CHROMAT_FILE:
MSMg01no105_l04.b1 PHD_FILE: MSMg01no105_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:25 2005
(553 letters)
>mm_chr6_68520700_68521653
Length = 954
Score = 978 bits (506), Expect = 0.0
Identities = 540/552 (97%), Gaps = 5/552 (0%)
Strand = Plus / Plus
Query: 5 ggaattctttttc--ttctctca-tcttaggtggtaaatgtgacattcagatgacccagt 61
||||||||||||| || | ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctttttcaatt-t-tcaatcttaggtggtaaatgtgacattcagatgacccagt 262
Query: 62 ctcctgcctcccagtctgcatctctgggagaaagtgtcaccatcacatgcctggcaagtc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcctgcctcccagtctgcatctctgggagaaagtgtcaccatcacatgcctggcaagtc 322
Query: 122 agaccattggtacatggttagcatggtatcagcagaaaccagggaaatctcctcagctcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaccattggtacatggttagcatggtatcagcagaaaccagggaaatctcctcagctcc 382
Query: 182 tgatttatgctgcaaccagcttggcagatggggtcccatcaaggttcagtggtagtggat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgatttatgctgcaaccagcttggcagatggggtcccatcaaggttcagtggtagtggat 442
Query: 242 ctggcacaaagttttctttcaagatcagcagcctacaggctgaagattttgcaagttatt 301
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 443 ctggcacaaaattttctttcaagatcagcagcctacaggctgaagattttgtaagttatt 502
Query: 302 actgtcaacaacattacagtactcctctcacagtgattcaagccataacataaaccaccc 361
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 actgtcaacaactttacagtactcctctcacagtgattcaagccataacataaaccaccc 562
Query: 362 tctacacttcactctccaaacaaagccatcagataattctaactcatggtttcatagcca 421
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 563 tctacacttcactctccaaacaaagccatcagataattctaacttatggtttcatagcca 622
Query: 422 ctcctagtttcaccaaatatacaaggaagcagaagtgaaagtctgctctgctgcaaatgc 481
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 623 ctcctagtttcaccaaatatacaaggaagcagaagtgaaagcctgctctgctgcaaatgc 682
Query: 482 tccctctgttgtctctagcttcaaggacccttttgcttaggccaaatttaaaggataatg 541
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 683 tccctctgttgtctctagcttcagggacccttttgcttaggccaaatttaaaggatgatg 742
Query: 542 tgctgcctttgc 553
||||||||||||
Sbjct: 743 tgctgcctttgc 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_l04.g1 MSMg01no105_l04.g1 CHROMAT_FILE:
MSMg01no105_l04.g1 PHD_FILE: MSMg01no105_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:25 2005
(455 letters)
>mm_chr6_68622830_68623684
Length = 855
Score = 598 bits (309), Expect = e-175
Identities = 422/463 (91%), Gaps = 14/463 (3%)
Strand = Plus / Plus
Query: 5 atgggcaattctgccattccatttcagaagttcatgattctatttacttcaaattgagca 64
|||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct: 195 atgggcaaacctgccattccatttcctaagtccctgattctatttacttcaaattgagca 254
Query: 65 tcctgcttttttggtgtatg-tatctgatagctcataaatgtgtactcaggaaagaagta 123
|||||||||||||||||||| | || ||||| | |||||||||| | ||| |||||||||
Sbjct: 255 tcctgcttttttggtgtatgat-tcagatagtttataaatgtgtccccagaaaagaagta 313
Query: 124 aataaaggaggttagttaaaaaacaaacaaaac---aacaa---caacaacaa-aac--c 174
||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||
Sbjct: 314 aataaaggaggttagttaaaaaacaaacaaaacaagaacaatagcaaaaacaacaacaat 373
Query: 175 aaaaa-ctttcatttttgatttttactctcaagttggcttattgaggacaggcttcaaga 233
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaaacctttcatttttgatttttactctcaagttggcttattgaggacaggcttcaaga 433
Query: 234 ccaaggttgctgtgcaatatgtgaaattaagttctgtagaataggagattctctgagatt 293
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccagggttggggtgcaatatgtgaaattaagttctgtagaataggagattctctgagatt 493
Query: 294 ttgaatgaaat-ggatgttgaacaattcatgagtagatgaagcataacaagtggtaccta 352
||| ||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 494 ttgtatgaaatagg-tgttgtacaattcatgagtagatgaagcatgacaagtggtaccta 552
Query: 353 tacattcaacaagacaatagtatttagaatatacaaagaaataaaagtgtaaccaaatga 412
||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 553 tacattcaacaagacaatagtatttagaatatacacagaagtaaaagtataaccaaatga 612
Query: 413 aacaagaaacaaatctaacaaaccattctttaaacaggcaaaa 455
||||| ||||||||||||||||||| ||| |||| ||||||||
Sbjct: 613 aacaacaaacaaatctaacaaaccaatctataaagaggcaaaa 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
