Query= MSMg01no106_g02.b1 MSMg01no106_g02.b1 CHROMAT_FILE:
MSMg01no106_g02.b1 PHD_FILE: MSMg01no106_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:43 2005
(675 letters)
>mm_chr6_117324151_117325224
Length = 1074
Score = 862 bits (446), Expect = 0.0
Identities = 476/486 (97%), Gaps = 1/486 (0%)
Strand = Plus / Minus
Query: 189 ttctcctagcagccttcaaatgaagatgtagaactctcagctctgccggcaccatgcctg 248
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1074 ttctcctagcagccttcagatgaagatgtagaactctcagctctgctggcaccatgcctg 1015
Query: 249 cctggatgctgccatgttcccgccttgatgatactggactgaacctccaaacctgtaatc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 cctggatgctgccatgttcccgccttgatgatactggactgaacctccaaacctgtaatc 955
Query: 309 tgttcccaattaaatgttgtccttataagagttgctttggtcacggtgtttattcacagc 368
|||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 954 tgttcccaattaaacgttgtccttataagagttgccttggtcgtggtgtttattcacagc 895
Query: 369 agtaagaccctaactaagacacatgggtacaacaaaactcatcctgataactggttccat 428
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 894 agtaagaccctaactaagacacatgggtacaacaaaacttatcctgataactggttccat 835
Query: 429 accatgccaaaactgatgaaaattgggtgccatgaattttccattctgcaatggctttga 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 accatgccaaaactgatgaaaattgggtgccatgaattttccattctgcaatggctttga 775
Query: 489 agagaactcagatggagaatattgaaagagattcctacactatagctaattggattgaaa 548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 774 agagaactcagatggagaatattgaaagagattcctacactatagctaattggattaaaa 715
Query: 549 ttattagggggttattttagatattttaaaaataaattcatttgtccttgatcaacattt 608
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 714 ttattagggggttattttagatatttt-aaaataaattcatttgtccttgatcaacattt 656
Query: 609 cttctaactatttcttccatggtattccacatttcccatcccatgatgccaagtctatga 668
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cttctaactatttcttccatagtattccacatttcccatcccatgatgccaagtctatga 596
Query: 669 aattta 674
||||||
Sbjct: 595 aattta 590
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space: 707560
Effective search space used: 707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_g02.g1 MSMg01no106_g02.g1 CHROMAT_FILE:
MSMg01no106_g02.g1 PHD_FILE: MSMg01no106_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:43 2005
(545 letters)
>mm_chr6_117230892_117231836
Length = 945
Score = 1007 bits (521), Expect = 0.0
Identities = 539/545 (98%), Gaps = 1/545 (0%)
Strand = Plus / Plus
Query: 1 aacacacgccaggactctgccctacactgaccccttaaagacatacgatttggaactaag 60
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 201 aacacacgccaggactctgccctacactgacacgataaagacatacgatttggaactaag 260
Query: 61 aatatccattggctcatatgttttctcaaaactgtgactcataggctaagatgttgtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatccattggctcatatgttttctcaaaactgtgactcataggctaagatgttgtcag 320
Query: 121 tgagacaaagagcaaaatcatgcaacttgggcatcagctagagtaaaatattgaagtaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagacaaagagcaaaatcatgcaacttgggcatcagctagagtaaaatattgaagtaat 380
Query: 181 tagttaactcagttaatgtgagttaagccagataaattccctggccccacattaaaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttaactcagttaatgtgagttaagccagataaattccctggccccacattaaaaaat 440
Query: 241 aataatttatatcatttacctcttgtgccttgtgcttttccctatccatacaatgaggac 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataatatatatcatttacctcttgtgccttgtgcttttccctatccatacaatgaggac 500
Query: 301 aaggaaagtacctacctcacttggatgctttgaagattgagagaatgcatagccacagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggaaagtacctacctcacttggatgctttgaagattgagagaatgcatagccacagcc 560
Query: 361 tcaagcacagcctattgcatccccacccagcacatctaagctagaataaggggacaagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaagcacagcctattgcatccccacccagcacatctaagctagaataaggggacaagac 620
Query: 421 gttgcaacagaaatagaagcaagttcaagatcataggtcaccagcaggatgtgactggca 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 gttgcaacagaaatagaagcaagttcaagatcataggtcaccag-aggatgtgactggca 679
Query: 481 gagctttcccggggaaagactggggctctcttcaggagttgctacataaggatttgctga 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gggctttcccggggaaagactggggctctcttcaggagttgctacataaggatttgctga 739
Query: 541 actat 545
|||||
Sbjct: 740 actat 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
