Query= MSMg01no106_l02.b1 MSMg01no106_l02.b1 CHROMAT_FILE:
MSMg01no106_l02.b1 PHD_FILE: MSMg01no106_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:30 2005
(550 letters)
>mm_chr6_133550757_133551706
Length = 950
Score = 395 bits (204), Expect = e-114
Identities = 468/592 (79%), Gaps = 77/592 (13%)
Strand = Plus / Plus
Query: 1 tctctaaatgat--accttatagatacctctaaccttgttcagttttttaatatgttctt 58
|||||||||||| | |||||||||||| ||| ||||||||| |||| |||||| ||||
Sbjct: 152 tctctaaatgatcaa--ttatagatacctataatcttgttcaggttttaaatatggtctt 209
Query: 59 ctaaacttg--gttaatgcccaagttggtcagaatctatattcctaggaatacatttggc 116
||||| ||| || ||||| |||||| ||| ||||||||||||||||| ||||||||||
Sbjct: 210 ctaaa-ttgttgt--atgccaaagttgctcaaaatctatattcctaggagtacatttggc 266
Query: 117 tgaatatcatagttatatattatattaagtttcaattttttc---ctttaaagt-attta 172
|||||||||||||||||||||||| |||||| | |||||||| ||| ||||| ||| |
Sbjct: 267 tgaatatcatagttatatattatagtaagttcccattttttcatccttgaaagtcatt-a 325
Query: 173 attttaa-ccattggcaataaccatataaatattagtatgtgtatgtgagtaaatattac 231
|||| || || ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 326 attt-aatcctttggcaataact-tacaaatattagtacgtgtatgtgagtaaatattat 383
Query: 232 agacaattgagctttacatgaaaggtctatgtagaccctt-agaacatat--atttccca 288
| ||| ||||| |||||||||||||||||||||||||||| ||| ||| ||||| |
Sbjct: 384 acacagttgagatttacatgaaaggtctatgtagacccttgaga---tattcatttcaga 440
Query: 289 atccagatttcttagaaaa-tt-------------------------------------- 309
| ||| ||||||||||||| ||
Sbjct: 441 aaccacatttcttagaaaactttatagcaaaaaaaaaaaaaaaagaaagaaagaaagaaa 500
Query: 310 cgtaa-ctt-a-------ataaagtttgtggatct--ccaggtagcataatttttttgct 358
|| || ||| | ||||||| ||||||||| ||| |||||| |||| ||| |
Sbjct: 501 cgaaaactttatagcatcataaagtctgtggatcttccca--tagcattatttccttggt 558
Query: 359 tttattttgctggttgcaaacacaggattcaat-gcatggtctgtcatgatgtgtttatg 417
|||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 559 tttatttttctgattgcatacacaggattcaattgcatggtctgtcatgatgtgtttatg 618
Query: 418 gcttttttctgttaataaatatttaagttattttctgttgttcaatcaatcagggcacat 477
||||||| |||| |||||||||||| | || |||| |||||||||||| |||||||| ||
Sbjct: 619 gcttttt-ctgtaaataaatatttaggatactttcagttgttcaatcattcagggcatat 677
Query: 478 agcactaaaatatttggaagtatatcatagaatcttttatatcagaaccaat 529
||||||||||||||||||| |||||| || || |||| ||| ||||||||||
Sbjct: 678 agcactaaaatatttggaaatatatcctaaaacctttcataccagaaccaat 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_l02.g1 MSMg01no106_l02.g1 CHROMAT_FILE:
MSMg01no106_l02.g1 PHD_FILE: MSMg01no106_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:30 2005
(434 letters)
>mm_chr6_133479731_133480564
Length = 834
Score = 785 bits (406), Expect = 0.0
Identities = 427/434 (98%)
Strand = Plus / Plus
Query: 1 aaatttaaaagatctttgtattttgttctggagtataagaacacaaggtatttgcccagt 60
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aaatttaaaatatctttgtattttgttctggagaataagaacacaaggtatttgcccagt 260
Query: 61 ctcttaaatacctgtacatttataggagcatctcagacagtaactgttgagcatagttgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ctcttaaatacctgtacatttataggagcatctcagacagtaactgttgagcttagttgt 320
Query: 121 gattatttgtctctggaagtcactttttgtcagacatctctaaactctcaaagattgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattatttgtctctggaagtcactttttgtcagacatctctaaactctcaaagattgtgg 380
Query: 181 tctaaagtttctctttattctattccttatttctagatttgaacaatgataatacatctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaaagtttctctttattctattccttatttctagatttgaacaatgataatacatctg 440
Query: 241 gtgtccaaccaatacccagtaagcacaatctatctttttttcatgctgcttgactgtcag 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 gtgtccaaccaatacccagtaagcacaatctatcttcctttcatgctgcttgactgtcag 500
Query: 301 tgtttcactgtgttgtcacatcatatctttgtcttatagatgagtaaatataatttctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttcactgtgttgtcacatcatatctttgtcttatagatgagtaaatataatttctct 560
Query: 361 atgcttataagcaaatatttcccaacctgatgatggagacgttattgaggtcagccaact 420
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcttataaataaatatttcccaacctgatgatggagacgttattgaggtcagccaact 620
Query: 421 gaatgaagttgaga 434
||||||||||||||
Sbjct: 621 gaatgaagttgaga 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
