This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-106M01
Chromosome
6 (Build37)
Map Location
102,992,726 - 102,993,314
singlet/doublet
singlet
Overlap gene
none
Upstream gene
EG666084
,
Cntn3
,
EG666123
Downstream gene
Chl1
,
LOC666141
,
LOC100043345
Link
Open Mouse BAC browser
Click to get alignment info.
name
EG666084
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666084
MGI:3649127
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins
pseudo
: _no_value
name
Cntn3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18488
MGI:99534
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG666123
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666123
MGI:3643727
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA
pseudo
: _no_value
name
Chl1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12661
MGI:1098266
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666141
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666141
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
LOC100043345
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043345
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Cntn3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:117938276
GeneID:18488
MGI:99534
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: contactin 3
transcript_id
: NM_008779.2
name
Chl1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:110347544
GeneID:12661
MGI:1098266
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cell adhesion molecule with homology to L1CAM
transcript_id
: NM_007697.2
name
Cntn3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:117938277
GeneID:18488
MGI:99534
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
note
: plasmacytoma-associated neuronal glycoprotein
product
: contactin 3
protein_id
: NP_032805.2
name
Chl1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:110347545
GeneID:12661
MGI:1098266
definition
GO_component
: GO:0045177 - apical part of cell [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007411 - axon guidance [Evidence IMP]; GO:0007610 - behavior [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0031175 - neurite development [Evidence IDA]; GO:0001764 - neuron migration [Evidence IMP]
codon_start
: 1
note
: close homolog of L1
product
: cell adhesion molecule with homology to L1CAM
protein_id
: NP_031723.2
name
EG666084
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666084
definition
number
: 1
pseudo
: _no_value
name
EG666084
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666084
definition
number
: 2
pseudo
: _no_value
name
LOC666141
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666141
definition
number
: 2
pseudo
: _no_value
name
LOC666141
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666141
definition
number
: 1
pseudo
: _no_value
name
LOC100043345
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100043345
definition
number
: 2
pseudo
: _no_value
name
LOC100043345
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100043345
definition
number
: 1
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:208006
definition
standard_name
: BB266622
name
(CDS detail)
type
STS
link
xref
UniSTS:144120
definition
standard_name
: Cntn3
name
(CDS detail)
type
STS
link
xref
UniSTS:211163
definition
standard_name
: RH127853
name
(CDS detail)
type
STS
link
xref
UniSTS:266902
definition
standard_name
: DBX
name
(CDS detail)
type
STS
link
xref
UniSTS:125746
definition
standard_name
: U42386
name
(CDS detail)
type
STS
link
xref
UniSTS:130799
definition
standard_name
: D6Mit250
name
(CDS detail)
type
STS
link
xref
UniSTS:123646
definition
standard_name
: 24.MMHAP4FRH9.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:159550
definition
standard_name
: AI465420
name
(CDS detail)
type
STS
link
xref
UniSTS:130966
definition
standard_name
: D6Mit64
name
(CDS detail)
type
STS
link
xref
UniSTS:125213
definition
standard_name
: MHAa54c9.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:123332
definition
standard_name
: 17.MMHAP15FRF8.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:130649
definition
standard_name
: D6Mit106
name
EG666123
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149255391
GeneID:666123
MGI:3643727
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA
product
: predicted gene, EG666123
pseudo
: _no_value
transcript_id
: XR_034802.1
clone name
MSMg01-376O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-440A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306H03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-546I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080N17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-098N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-071H18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-265B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-548K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353G03
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-090G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-355M21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-192P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351K04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-078L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107O05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066H06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414F12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295P12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131F06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-328P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-334D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-388M08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290I17
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-109H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401N01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161A21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-106M01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-207K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-526C12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-178B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-267L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-264M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-416O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352I15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-112H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-391P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-528P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-131C10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-235K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-503O18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-346A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-516M14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322G23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-195K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-431I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-349P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-063N14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-158N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-437N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-292A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-201K12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-361J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-218K01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497K13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111G12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-462F20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-504B13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-142H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470H10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-166C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346B13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-403D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-309F06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-104M08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-131O11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-046F13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-265N14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-216E24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-036J04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-285F24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240D13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-275K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-180C05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-028H05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-277J21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-206O08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-091N18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-091P16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-095B14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-328G21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-113L14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-034O23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-087I13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-148O22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-243J02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-071B10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-078N07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049G10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-137P14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-261B03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-336H17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-134C15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-115B01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-157G13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-045D08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-284O19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-308I07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-030I08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-059A15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-294P06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-009A24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-018B10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-290D11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-168H23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-347C19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-168H22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-286P02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-241G16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-173P24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-253O03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-324L03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-015K13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-208D02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-230K05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-174N05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-086F11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-177D24
singlet/doublet
singlet
plural/unique
unique
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B6Ng01-049G04
singlet/doublet
singlet
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clone name
B6Ng01-284K08
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singlet
plural/unique
unique
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B6Ng01-161H13
singlet/doublet
doublet
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unique
clone name
B6Ng01-288G14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-217P09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-187D14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-291F02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-280D11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-279M11
singlet/doublet
doublet
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unique
clone name
B6Ng01-066I04
singlet/doublet
singlet
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unique
clone name
B6Ng01-050K01
singlet/doublet
doublet
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unique
clone name
B6Ng01-272C22
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doublet
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unique
clone name
B6Ng01-270O08
singlet/doublet
singlet
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unique
clone name
B6Ng01-271M18
singlet/doublet
doublet
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unique
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B6Ng01-224I14
singlet/doublet
singlet
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unique
clone name
B6Ng01-081I20
singlet/doublet
doublet
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unique
clone name
B6Ng01-126P17
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singlet
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unique
clone name
B6Ng01-151F22
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doublet
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clone name
B6Ng01-319H24
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singlet
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B6Ng01-003O21
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doublet
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B6Ng01-148A23
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doublet
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B6Ng01-133F04
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singlet
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B6Ng01-191N16
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B6Ng01-350O20
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doublet
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B6Ng01-240O23
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doublet
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B6Ng01-134A01
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doublet
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doublet
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B6Ng01-144A01
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singlet
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B6Ng01-324K08
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B6Ng01-184M17
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doublet
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B6Ng01-058F24
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B6Ng01-269I20
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doublet
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B6Ng01-030P01
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doublet
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B6Ng01-305J11
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doublet
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B6Ng01-177M23
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B6Ng01-281F04
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doublet
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B6Ng01-181D16
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singlet
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B6Ng01-130J12
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B6Ng01-179A03
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B6Ng01-080F04
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B6Ng01-114G20
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B6Ng01-113B07
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B6Ng01-147J17
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doublet
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B6Ng01-024A21
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B6Ng01-271N02
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B6Ng01-106G05
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doublet
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B6Ng01-034H14
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B6Ng01-194F09
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B6Ng01-094O20
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doublet
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B6Ng01-078J07
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B6Ng01-014C22
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B6Ng01-178D17
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B6Ng01-059A01
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B6Ng01-294C20
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doublet
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B6Ng01-272F19
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