BAC Information

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BAC

Clone NameMSMg01-108F07
Chromosome6 (Build37)
Map Location 134,199,499 - 134,296,097
singlet/doubletdoublet
Overlap geneEtv6, LOC100043660
Upstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneBcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108F07.T7 (MSMg01no108_f07.b1)MSMg01-108F07.TJ (MSMg01no108_f07.g1)
ACCAG321805AG321806
length731739
length of high quality
(start - end)
227 (78 - 304)263 (79 - 341)
definitionCHROMAT_FILE: MSMg01no108_f07.b1 PHD_FILE: MSMg01no108_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:09 2005CHROMAT_FILE: MSMg01no108_f07.g1 PHD_FILE: MSMg01no108_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,295,871 - 134,296,097)(134,199,499 - 134,199,761)
sequence
TCACCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGCAGAATCC
GCGGAATTCTTGCTTTCTCCTGAAATTTTGTTGATAAGCATTACAGATTT
CCAGTTAGTCTCTGACCTTTGAAGCCATGATGGGGGGAGATAACATAATG
TGTCTTTAATCTTTCATTCCAATAACTGCTCCCCTTTCCCTTTAGCCAGA
TGGGTCTGTAGAACAAGGGCAGTGATGTGTGCAGATAAAGAAAGAACTAG
ATATTGTGTCCATGGCTGGGGAGTTGGCTCAGTTGCTTAAATGTTTGCTG
TATAAGCGTGGGGACATCAGTTATTATTCCAGTACCTGTGTGAAAACAGG
CACAAGGTCACTCCTGTAATCCTAGCTCTGGGGAGTATAGGTGGGCACAT
CTCAAGCGCTCTCTGGTCAGTCAGTTTCCGCACTTTGATAACTCCAAGTT
CAGTGATAGACTATCTTTAAAAGACTTAGTTCATTGTGTCGGCGCATGCC
TTTAATCTCAGCACTTTGAAAGCATATGCATTTTTATTTCTTAATCCCAT
CCCTTTCTGTTCTATATATTGATTTCCAGGATCGCCTGACTTTCCCCAGA
AATCCTGGCTTCGCTAATTCATAAATTATTTCCACATTGAATTTTGTTTT
TTTAAACCTAAAATTATTTTCTTAGTTTATCTCCGGCCTTCGTCCGTGTC
TCACTACTATGTCTCTTCCTTGTACATTGTG
TTTCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGGGCACCTACGATGCACA
GATAAATACATCCGCTGTGCTGTATACCGCGGTGATTTAACATCCAGCAT
CCTCCCCCTTGTAGAACTGAAAGTTTACAGGGAGAAGCACATATGAACCC
CATTAAGATACAGGGCGGATGATGAAAGGTTCACCGCTTACCCGGGCAGA
GTACAAGTGTTCATCGAGCGAGCGCCTTCTGTGCAGCAGAAGGCCAAAGC
AGCGAGAAGCTGTGTTTGGACTGGTGGAGCCCGGCGGCTTCACAAGGGCT
GGGGAAATGGGAAGCAAGTGGCGGTGCTTCCCTTGCTAGGAAAAGACTCA
TAGTTAGGGTAGAGCCCCGTGCACGTGATGGGGATAAACAGCCCTTCTCC
GCAGCTGGTACTGCCCGCATGTAGCAGCTCCCAATGAGAGCCCTGCTTCA
CCTCTGCCTTAGCTTCTTGTCTCCTCTTAAGTCATCCATTTCTAGGAGTT
TGCCTGTCCCTGAGTACACCCCCACCGTTGTCCTTGCATTTTTTGCTATA
ATAATTTACCTCGCAGCTGGCTGACCCAAGACCATAACACCGTACGGTCT
GGGTGGTAAGATATTGCACCCTTAATGTGCCTCTCGTTTAGTTCCAGGCT
CTCCCGGGCCCAGGCCCCAACTCCTTGTGTTCCCTGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_f07.b1 MSMg01no108_f07.b1 CHROMAT_FILE:
MSMg01no108_f07.b1 PHD_FILE: MSMg01no108_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:09 2005
         (227 letters)



>mm_chr6_134295671_134296297
          Length = 627

 Score =  431 bits (223), Expect = e-125
 Identities = 226/227 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgttgataagcattacagatttccagttagtctctgacctttgaagccatgatgggggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 427 ttgttgataagcattacagatttccagttagtctctgacctttgaagccattatgggggg 368

                                                                       
Query: 61  agataacataatgtgtctttaatctttcattccaataactgctcccctttccctttagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agataacataatgtgtctttaatctttcattccaataactgctcccctttccctttagcc 308

                                                                       
Query: 121 agatgggtctgtagaacaagggcagtgatgtgtgcagataaagaaagaactagatattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agatgggtctgtagaacaagggcagtgatgtgtgcagataaagaaagaactagatattgt 248

                                                          
Query: 181 gtccatggctggggagttggctcagttgcttaaatgtttgctgtata 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtccatggctggggagttggctcagttgcttaaatgtttgctgtata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no108_f07.g1 MSMg01no108_f07.g1 CHROMAT_FILE:
MSMg01no108_f07.g1 PHD_FILE: MSMg01no108_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:09 2005
         (263 letters)



>mm_chr6_134199299_134199961
          Length = 663

 Score =  485 bits (251), Expect = e-142
 Identities = 260/263 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggggcacctacgatgcacagataaatacatccgctgtgctgtataccgcggtgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 catggggcacctacgatgcacagataaatacatccgctgtgctgtatacagcggtgattt 260

                                                                       
Query: 61  aacatccagcatcctcccccttgtagaactgaaagtttacagggagaagcacatatgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacatccagcatcctcccccttgtagaactgaaagtttacagggagaagcacatatgaac 320

                                                                       
Query: 121 cccattaagatacagggcggatgatgaaaggttcaccgcttacccgggcagagtacaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccattaagatacagggcggatgatgaaaggttcaccgcttacccgggcagagtacaagt 380

                                                                       
Query: 181 gttcatcgagcgagcgccttctgtgcagcagaaggccaaagcagcgagaagctgtgtttg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gttcatcgagcgagcgccttctgtgcagcagaaggccaaagcggcgagaagctgtgtttg 440

                                  
Query: 241 gactggtggagcccggcggcttc 263
           |||||| ||||||||||||||||
Sbjct: 441 gactggaggagcccggcggcttc 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)