XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCGGAATTCAG
GCCCATACTAAACATAGTAAAAGCAATATATAGCAAACTAGGAGCCAACA
TCAAACTAAATGGAGAGAAACTTAAAGCAATCCCACTAAATTCAGGAACT
AGACAAGGCTGCCCACTTTCTTCCTACCTATTCAACATAGTACTTGAAGT
CCTATCCAGAGTAATTAGCCAACAAAAGGAGATCAAAGGGATACAAATTA
GAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGATGATAGTATATAT
AAGTGACCCCCAAAATTTCACCAGAGAACTCCTAAATCTAATAAACAACT
TCCTTAAAGTAGCTGGATATAAAATTAACTCAAACAGATCAGTGGCCTTC
CTTTACTCAAAGGATAAACATGCTGAGAAAGAAATTAGGGGAACAACACC
CTTATAATAGTCACAAATAATGTAAAATATATTAGTGTGACTCCAATTAA
GCAAGTGAAAGATCTGTATGACAAGAACTTTAAGTCTCTGAAGAAAGAAA
TTGAAGAAGATCTCCAAAGATGGAAAGATCTCCCATGCTCATGGATTGGC
AGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATT
CAATGCAATACCCATCAAAATTCCACCTCAATTCTTCATAGAGCTAGAAA
GAGAAACTCTCATATTCAN

ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACCCACAATCATCTGCTCAACATTCCATTCTG
TAAATCCACAGCACTAAAGAGCTTCCTGATGCCTATTTCTTCTACAACTG
CTTTTAATATAATGATCTGTGTCATTGTCTACTACGTAGGAAATCCTGTT
TCTCATCTGATGCTTCCGCATCTGAATGACCATTCATATTTCACCATTCT
TCTCTTCTGACCTCTTGAGGTATGATTTGGAAGAACATTCAGTGTTTTAG
TCTCTTTTCTGTTTCTATAGCAAAGAACATGAAACTCAGTAACTTATAAA
AAGAGGTTTGCTAACACATGAAACTGAAGAAGAACGAAGACCAAAGTGTG
GACAATTTGCCCCTTCTTAGAATTGGAAACAATCACCCATGAAAGGAGTT
ACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGACT
GCCATATCCAGGGATCCATTCCATAATTAGCCTCCAAACGATGACACCAT
TGCATACACTAGCAAACATTTGCTGAAAGGACCCTGATGTAGCTGTCCCT
TGTGAGACTAGGCCAGGGCCTAGCAAAAACAGAAGCGGATGGTCACAGTC
AGCTATTGGATGGATCACAGGCCCCCTAATGGAGGAGCTAGAGAAAGTAT
CCAAGGAATTAAAGA

Query= MSMg01no108_m18.g1 MSMg01no108_m18.g1 CHROMAT_FILE:
MSMg01no108_m18.g1 PHD_FILE: MSMg01no108_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:46 2005
         (594 letters)



>mm_chr6_109531043_109532036
          Length = 994

 Score =  870 bits (450), Expect = 0.0
 Identities = 459/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacccacaatcatctgctcaacattccattctgtaaatccacagcactaaagagcttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cacccacaatcatctgctcaacattccattctgtaaatccacagcactaaagagcttcct 404

                                                                       
Query: 61  gatgcctatttcttctacaactgcttttaatataatgatctgtgtcattgtctactacgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 403 gatgcctatttcttctacaactgcttttaatataatgatctgtgtcattgtctactactt 344

                                                                       
Query: 121 aggaaatcctgtttctcatctgatgcttccgcatctgaatgaccattcatatttcaccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aggaaatcctgtttctcatctgatgcttccgcatctgaatgaccattcatatttcaccat 284

                                                                       
Query: 181 tcttctcttctgacctcttgaggtatgatttggaagaacattcagtgttttagtctcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcttctcttctgacctcttgaggtatgatttggaagaacattcagtgttttagtctcttt 224

                                                                       
Query: 241 tctgtttctatagcaaagaacatgaaactcagtaacttataaaaagaggtttgctaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tctgtttctatagcaaagaacatgaaactcagtaacttataaaaagaggtttgctaacac 164

                                                                       
Query: 301 atgaaactgaagaagaacgaagaccaaagtgtggacaatttgccccttcttagaattgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 163 atgaaactgaagaagaacgaagaccaaagtgtggacaatttgccccttcttagaagtgga 104

                                                                       
Query: 361 aacaatcacccatgaaaggagttacagagacaaagtttggagctgagacaaaaggatgga 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 aacaatcaccaatgaaaggagttacagagacaaagtttggagctgagacaaaaggatgga 44

                                                     
Query: 421 ccatctagagactgccatatccagggatccattccataatta 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  ccatctagagactgccatatccagggatccattccataatta 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)