BAC Information

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BAC

Clone NameMSMg01-109A08
Chromosome6 (Build37)
Map Location 137,981,036 - 137,981,168
singlet/doubletsinglet
Overlap gene9830102E05Rik
Upstream geneRerg, Ptpro, Eps8, Strap, Dera
Downstream geneMgst1, Lmo3, Igbp1b, EG668196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109A08.T7 (MSMg01no109_a08.b1)MSMg01-109A08.TJ (MSMg01no109_a08.g1)
ACCAG322310AG322311
length735746
length of high quality
(start - end)
158 (144 - 301)133 (74 - 206)
definitionCHROMAT_FILE: MSMg01no109_a08.b1 PHD_FILE: MSMg01no109_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:04 2005CHROMAT_FILE: MSMg01no109_a08.g1 PHD_FILE: MSMg01no109_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGTTCTTTTTNNCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTCAAAGAGGATCCGCGGAATTCAGTCTGTCCTGAAATATGATAGGTTT
GTGCATGATGATGTCACAATGTGAGTTTGGACATGTGGCTCGACTGCTGT
ATCTAAACGATGCTGCTTCCTTGGATGGCCTCTACCCCATCACATCTGGC
TCTTTTATCCTCCTCTTCCATGGAGATCCTTAACTCTTGGGAGGCAGAAG
TATGGTATATTTGATCCATTTACGGAAGTGCTTTACTCTCGGTACCTTGA
GCAGTTAAGCATCTCTGTGTAAACCGTTGTACACTTGTTTTTAAAATATT
GTAATTTGATACTTTTATTTTTCAGCTTTCTTAACCAACCACCCCCCCCC
TGTAGGTTTCTTATATAAATATTTAAGTCTCCCCCCCAGCTTTAGATGAT
ACTACCCGCTTCAGAGTTTACAGTCCTTATTATCATTTCATTTAAATGTT
TTAAACCTTCATTATATTCTCTTCTTTATACCACAATATATGAACATATG
TGTTCTTTTTCTTCTTAAACCAATGAATCTTGTGTCTCATGCCTTTTCTT
GCCTTGATCTTATTTAACCATTCCGACATCAGTCCTTCAAAATATGAAAT
ATTTCCATCCTTCTCTTGTTTACATTTTTCTTCTAATAAATAAAACAGCC
TACTCGATCACATTAGCTTCCTGGTGCTCATAAAA
CGATACAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGGTCAGGCTTTGTATGGGACTTGT
CAGTAATGCTAATTAAGCTCATTTTAATCAGATGAATACTAGGATGTGTC
AGCCCTTGCTACTGAATGGAGCAGGTTTCAGAAACGGAATCTATGTAATC
GGTGCAAGGGAAAGAAATACTCATAGTGTGACCAACTTCGCATCGAGAAA
ATCAGAGTCAAAAGAATCACTAGGTATTGACAGGAGGTATGTATTACCAT
CTTTAAAATGTGTGAAGAGTAAGTTTTATGTGGGAATACATGCATCTTTG
CATATAGAATATTAATTTTTTTAACCTTACAATACTATGATGTTGTTACG
ATTTTGTCTTGTTTACCCTCTGGCATTAGTACATAATGTCTATTCTCTAT
TTGTATGCTTTGCTGTTTTGAACACCAGAAAAAGCAACCTGTATGTATTA
AAGTTGTTTACCGTCTTCTCCTTTTGTCTTTCCTTCTTCTCTTTAATGAG
GAGGGGGGGGGGGGAAAAGAACCTTCCTAAAATCTTTAGATATTCAATCA
AATTATACTACTCAATTTATGTGGTGCCACCACTGAACAAAAACATATAC
ATATATCTGAGTGTAGGTGTGGGGTGGAGAGAGGGTCTAGAGGGAGGAGA
GGAGGTGGGACCGGCGGAAGCGATTATGGGCTGTAGAATACAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_a08.g1 MSMg01no109_a08.g1 CHROMAT_FILE:
MSMg01no109_a08.g1 PHD_FILE: MSMg01no109_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:04 2005
         (133 letters)



>mm_chr6_137980836_137981368
          Length = 533

 Score =  257 bits (133), Expect = 2e-73
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggtcaggctttgtatgggacttgtcagtaatgctaattaagctcattttaatcagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggtcaggctttgtatgggacttgtcagtaatgctaattaagctcattttaatcagat 260

                                                                       
Query: 61  gaatactaggatgtgtcagcccttgctactgaatggagcaggtttcagaaacggaatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatactaggatgtgtcagcccttgctactgaatggagcaggtttcagaaacggaatcta 320

                        
Query: 121 tgtaatcggtgca 133
           |||||||||||||
Sbjct: 321 tgtaatcggtgca 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 533
Length adjustment: 8
Effective length of query: 125
Effective length of database: 525
Effective search space:    65625
Effective search space used:    65625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)