BAC Information

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BAC

Clone NameMSMg01-109G19
Chromosome6 (Build37)
Map Location 106,001,835 - 106,148,755
singlet/doubletdoublet
Overlap geneCntn4
Upstream geneLOC384470, LOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109G19.T7 (MSMg01no109_g19.b1)MSMg01-109G19.TJ (MSMg01no109_g19.g1)
ACCAG322613AG322614
length714697
length of high quality
(start - end)
285 (89 - 373)243 (87 - 329)
definitionCHROMAT_FILE: MSMg01no109_g19.b1 PHD_FILE: MSMg01no109_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:39 2005CHROMAT_FILE: MSMg01no109_g19.g1 PHD_FILE: MSMg01no109_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,148,471 - 106,148,755)(106,001,835 - 106,002,076)
sequence
CTATTTCTTNNNGACTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
AAAGAGGATGCGCGGAATTCACTATTTACAGAGATAATCAAATGTTGGAG
CACACTGGCTTAGAAACCTCAGTTTAGATATAGCCCCAGGATTCTACATT
TGTAGGATCTGAAAATTTAAGTGTTAGAATTAATTTCTAGAAGTATTTGG
TGCTCATAGATAGGAGAGTGGTATCTTTGGGTATTTATCTCAATAATTTT
CATGGAAACAGTAAAGATCAAAATTCCATACTGATTCATAATCAGTGAAC
AAAGTTTATATTTACATAAAATTAATAAATTCTTTTTAATTTTTACAGAT
TTACTGAATTTAAGATAAAGTTTAAATAATAACTCCATTTGCATGCAATG
GTGGTACAAACCTTTAATTCCAGCATTCACGACGTAGAGAGGAAGGTGAA
TCTGAGTTCTCAGCCAGCCTGGTCTATAGAGTGAATTTCTGGGTAGTCCA
GTGCTACGTTATGAAACCCCATTTTACATTATCTATCGAAACTAAATATA
CTAACAATTATGAATATAATTGATAATCTTTCCTTCTCTCATCATAAATA
CTATTGATGATACAACGTCATGATCAAATTCACACAACCTCTCCCATTTC
TACAAAATCTACTTCAGATTATCATCTCTATCTCTACTGTACCCTACCCA
CCACCCCCTATCTT
NCCATTTCTTNNNACCGATGAAGTGGGAGGCCTGGCGGCCGCCTGTTTCA
CACATGGAGGTGAACTATAGAATTCTCAGAGAAATTCACTGGATGCATTT
CAGATCCATATTGTTCTATCAAGTTAAGTTTAGATTTCAGATCTCTTCTG
CTAAGTCTATTTACTTTCTTCCCCATTTGAGAAAGTCTGAAGAATATACC
CTGTCACAATGCTTAGAGTTTGTGCTTTTAATCAGCATCTTGGAGAAATT
CTAAGCTTCACTTAGAATCTGTTTGAATAGTTTCTGCTTAGACCAAAACC
TCCTGCCTGCTGCTTCCTGAGTAACAAGTTTTTTGGAGTAGACACAGGTC
TTTGTTTGCATGGATGTGAAATTCTGAGGCTCCAATGTTCTCTTTAAGTT
AAGTTATAGCCTTAGAAATTATACAGGCTTTTCAAAAGTCTCAATTTGAA
TATTAGATTGTATAGTATCTTGTTCAGTATAATTTATTATCTTAGAGATG
CATTTACATTATTAGCTACTGATAACATTTTAACCTTACTTGCTGCTATG
AATTAAATGAATATGGCTTGCTCTGCGATATATATACATAAACACATATA
TCTCACATATATGCATATATATATGCTCATAGCTCACATATATACCTATA
TATAATGTTAATGAATATTGAAATAGCCTATTATTGTATCTATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_g19.b1 MSMg01no109_g19.b1 CHROMAT_FILE:
MSMg01no109_g19.b1 PHD_FILE: MSMg01no109_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:39 2005
         (285 letters)



>mm_chr6_106148340_106149024
          Length = 685

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgttggagcacactggcttagaaacctcagtttagatatagccccaggattctaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caaatgttggagcacactggcttagaaacctcagtttagatatagccccaggattctaca 357

                                                                       
Query: 61  tttgtaggatctgaaaatttaagtgttagaattaatttctagaagtatttggtgctcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tttgtaggatctgaaaatttaagtgttagaattaatttctagaagtatttggtgctcata 297

                                                                       
Query: 121 gataggagagtggtatctttgggtatttatctcaataattttcatggaaacagtaaagat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 296 gataggagagtggtatctttgggtatttatctcaataattttcatggaaacaataaagat 237

                                                                       
Query: 181 caaaattccatactgattcataatcagtgaacaaagtttatatttacataaaattaataa 240
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 236 caaaattccatactgactcataatcagtgaacaaagtttatatttacgtaaaattaataa 177

                                                        
Query: 241 attctttttaatttttacagatttactgaatttaagataaagttt 285
           ||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 176 attcactttaatttttacagatttactgaatttaagataaagttt 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no109_g19.g1 MSMg01no109_g19.g1 CHROMAT_FILE:
MSMg01no109_g19.g1 PHD_FILE: MSMg01no109_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:39 2005
         (243 letters)



>mm_chr6_106001635_106002277
          Length = 643

 Score =  422 bits (218), Expect = e-122
 Identities = 236/242 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactggatgcatttcagatccatattgttctatcaagttaagtttagatttcagatctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactggatgcatttcagatccatattgttctatcaagttaagtttagatttcagatctct 260

                                                                       
Query: 61  tctgctaagtctatttactttcttccccatttgagaaagtctgaagaatataccctgtca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tctgctaagtctatttactttcttccccatttaagaaagtctgaagaatataccctgtca 320

                                                                       
Query: 121 caatgcttagagtttgtgcttttaatcagcatcttggagaaattctaagcttcacttaga 180
           | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 321 ccatgcttagattttgtgcttttaatcaacatcttggagaaattctaagcttcacttaca 380

                                                                       
Query: 181 atctgtttgaatagtttctgcttagaccaaaacctcctgcctgctgcttcctgagtaaca 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctatttgaatagtttctgcttagaccaaaacctcctgcctgctgcttcctgagtaaca 440

             
Query: 241 ag 242
           ||
Sbjct: 441 ag 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)