BAC Information

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BAC

Clone NameMSMg01-109H19
Chromosome6 (Build37)
Map Location 102,907,982 - 102,908,405
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666084, Cntn3, EG666123
Downstream geneChl1, LOC666141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109H19.T7 (MSMg01no109_h19.b1)MSMg01-109H19.TJ (MSMg01no109_h19.g1)
ACCAG322660AG322661
length714713
length of high quality
(start - end)
287 (80 - 366)423 (76 - 498)
definitionCHROMAT_FILE: MSMg01no109_h19.b1 PHD_FILE: MSMg01no109_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:44 2005CHROMAT_FILE: MSMg01no109_h19.g1 PHD_FILE: MSMg01no109_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTATGAGAG
CGCGGAATTCCTTTACTTTCACAATAAAGAATGATTTTATTTTTTCATCC
AACTTTTGAAATATGTGGGTCCATTAGGTAATACATAGGATACATTGAAT
CAATGATAATGCTGGTGTATAGATTCTTTTAAACACTTCTTAAGAATCTG
TTCTAATTAAACATTAGTCATCTGACTGAAATAGAAAAAAATATATAGTC
AGTTTCTTTATGGGATAGCGTCATATAAAACTCTTGATGCTCCAGAACAT
TTGTCTACACCCATTCCCTTCTTTTTTTTTAATCATTCCCTCTGAGTAGT
TCTCTATGTATCTTAAGAATCACAGCGCCTGCGGAGCATCCTGGAAACTG
TAGGGGTCATGATCTGCATAAGGATAGGCAGCTCTATTGTTGCTATAGTT
TGGATCTGGAATGTTTCCCCAAAGGGCCTTGTATGAACGATTTGGCCACA
GTGTGTAGTGTTACTAGGAGGTGAGGAAAACTTTAAAATGTGGGAGCTAG
TAGATAGTCTTGTCATTTGTATGACCTCAAAGAGAACTGTAGGATGCTCA
TCTTTTGGCCTATGCTTTGGCCTCTGGACATGTGTCTTATTGGACTTATG
CTGTGATGTATCAATATGACCACAGTAACTCTTTGTGCATGTATGTGTCT
GTGATTGTGAGTCA
NCCCTCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGACTGCTTAAAAANAGGAATATT
TGTTTATGGCTTTAAAGGGTTCCCAAGTGTTTGTTTACTTACATCTTAAC
TGATTGTTTGACTACAAATTACCAAAGGAAAAAATGAAATCAAAATAAAT
GGGAATTAACAGCAGTGGCCTAATTTGTTTTTAATGCTTCATTGAGTACA
ATATTTAAATTACTCTTCCTCTCTGAAGACCACTGTTTTGCACTTAACTT
GTGATGAAAGTATTAAATGGTACTTCTGATTTCCCTAGTTTTGATCCCTG
CAGTGAGGTGAATTACTTCCTTTAAAAGGACATGTTTTCTTTGACAAAGT
TGGGGATCCTGAGATTGTAAATTTGATCACTTCTCCTTTTCCTCTGCTTT
TTCCTCCTCCTCCTTCTTGATTTTGGGATTCTGCTGACCTAAGTTGAATA
GAGCCAACATTTATTTTCTGGGAAGGAAGACATAATATGGTTACTTTTAT
ATAATTAAATTGAACCTTTAAATACCTACCTGTACACACACACATACATA
CATACACACCCATTTACATTCACAACTCATTAAAACACATCACACTTTTA
TTAATATTTCCTCGATTTGTTTGGAATCTCCTCTCCTATAATAAATAACT
CATTTATTTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_h19.g1 MSMg01no109_h19.g1 CHROMAT_FILE:
MSMg01no109_h19.g1 PHD_FILE: MSMg01no109_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:44 2005
         (423 letters)



>mm_chr6_102907851_102908674
          Length = 824

 Score =  729 bits (377), Expect = 0.0
 Identities = 412/424 (97%), Gaps = 1/424 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgactgcttaaaaanagg-aatatttgtttatggctttaaagggttcccaagtgtttgt 59
           ||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct: 555 ttgactgcttaaaaaaaggtaatatttgtttatggctttaaagggtttccaagtatttgt 496

                                                                       
Query: 60  ttacttacatcttaactgattgtttgactacaaattaccaaaggaaaaaatgaaatcaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttacttacatcttaactgattgtttgactacaaattaccaaaggaaaaaatgaaatcaaa 436

                                                                       
Query: 120 ataaatgggaattaacagcagtggcctaatttgtttttaatgcttcattgagtacaatat 179
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 435 ataaatgggaattaacagcagtggcctaatttgtttttaatgcttcgttgagtacaatat 376

                                                                       
Query: 180 ttaaattactcttcctctctgaagaccactgttttgcacttaacttgtgatgaaagtatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttaaattactcttcctctctgaagaccactgttttgcacttaacttgtgatgaaagtatt 316

                                                                       
Query: 240 aaatggtacttctgatttccctagttttgatccctgcagtgaggtgaattacttccttta 299
           |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 315 aaatggcacttctgatttccctagttttgatccctgtagtgaggtgaattacttccttta 256

                                                                       
Query: 300 aaaggacatgttttctttgacaaagttggggatcctgagattgtaaatttgatcacttct 359
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 255 aaaggacatgttttctttgacaaagttggagatcctgagattgtaaatttgatcacttct 196

                                                                       
Query: 360 ccttttcctctgctttttcctcctcctccttcttgattttgggattctgctgacctaagt 419
           |||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 195 ccttttactctgctttctcctcctcctccttcttgtttttgggattcttctgacctaagt 136

               
Query: 420 tgaa 423
           ||||
Sbjct: 135 tgaa 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 824
Length adjustment: 9
Effective length of query: 414
Effective length of database: 815
Effective search space:   337410
Effective search space used:   337410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)