BAC Information

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BAC

Clone NameMSMg01-109J02
Chromosome6 (Build37)
Map Location 21,629,952 - 21,630,202
singlet/doubletsinglet
Overlap geneKcnd2
Upstream geneLOC100041343
Downstream geneTspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109J02.T7 (MSMg01no109_j02.b1)MSMg01-109J02.TJ (MSMg01no109_j02.g1)
ACCAG322719AG322720
length723925
length of high quality
(start - end)
251 (81 - 331)---
definitionCHROMAT_FILE: MSMg01no109_j02.b1 PHD_FILE: MSMg01no109_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:50 2005CHROMAT_FILE: MSMg01no109_j02.g1 PHD_FILE: MSMg01no109_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCGNACAATCTAAATTGCGGCGCTAATACGACTCCTATAATCCGGACGC
GGCGGAATTCCCTTCTAGATTACAAAAACATGAGAGGAAATTTTCATTAT
AATTATTTGTTTTAGAATCTAAAGTAGAGCTTGAGGATATCTTAGAAATG
CCTCATAAGAAAGAGTCCCCAGTTTAGTATGCTAAACAGGATCTAACAGC
TTTTGCAGAGCATAAATTTTGGCAGTATACTTTAATATGAGATCCATGCA
TGTGGTGATACACAGATTACCCTTTAGAGAGGTTTCATAAAAATGTGAAA
TGTTTGAAAGGTAGACAAGGAAAAATCAACATTTTTACCCAGTGGGAAAA
CTGCAAAGGAATGGAAAGCCGATTATCCCTCCCCCTACTCGGGAAAAATA
ACAACTAATGAGGCTGTGACTTACAGCCTGCTGCTAACAAAGAAGCGGAG
TCACCGAGGTCTGATGTGGAATATGCCATATTTAGTGTCATTTATTAAAT
GGTCCCCAATACAATTACTAAATGCCATAGAAAACACTACAAAGTCTTTA
TCTATTTTCTCACTTGCACCCACAGATTCATTTCTATCACCCCGTTCATC
TTTAATCCCCCTGACCACTTCATACAACTCCCATGACTCCCCTCGGGTTA
CAACGTTAGGGATCCTGTTGTATATCCCAAAGCCGCTACGCCCAACCACT
TTTCCGCGCCCCTGTCTGTACCC
ATTACTTTNNAATTCTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCCACGAAATTCTTNTGTGGG
TTCCTGCCCAAGCAGACAAGGCAGGCAGTAATCTCAAATATTTATTGAAT
CTTCCGTCTTATCTCCAGATGGCTATCTCTTAGACGGTTATAACACTAAA
TCTCATCTTTTATCTGTATATTCAAACAGATTCTCAAGCCACTGTTATAA
CAATACAGTCTCTCTAGTCACTCTTGTATTCTAACAATCACAGTTCTCTC
ATATGCATTACGTATTATCTACCTTTCTCAAATCTAGATGTGTCTGCACT
TGTGCACACATGACTCTCCTTACAAGATCAACGACATGACTAGCACTTGT
TGTTTTCTCATCCAAGCAAGTCTGACTATGCTGCAAGTTCTTTCTCATCA
CTAGATCCCCTCTTATCTCGTGTTCTCACTCAGCATCAAATCATGTTCTT
CTGTACTATGAGTATTTTCTCTACCTTACTGCTTTTTATACCATAGCCAT
GACTTCACTTGCTGTTATATTGTCGCCATTGTCAACCACTACCACTTTAT
AACTATCCTTGCACTTTATACATTTTCTCGTCCTGCTCTATTTCTTACTT
TACTTTTACCATCTTCACGACTGTTTATCTCACTCTTTCCCGCCAGTTAT
CCCCCTCTTGTTAACACCCCCTTTAATCTCCGCTTTGCGCCTTCTCTTTG
TTGTATTCCTAGCAATTATCATACCCACTCAATTTCTCCAATTATCATCT
ACTCTTGGGCCATCCGGCCTTATTTCTGTGCCCTCATTTATACTCACTCA
CCACGCATTTTTATGTTACCTCGCCCCTTCCCATTTTTATTTCTTTCAAC
AACTCCTTTTTCTTTTTTCCTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_j02.b1 MSMg01no109_j02.b1 CHROMAT_FILE:
MSMg01no109_j02.b1 PHD_FILE: MSMg01no109_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:50 2005
         (251 letters)



>mm_chr6_21629752_21630402
          Length = 651

 Score =  462 bits (239), Expect = e-135
 Identities = 248/251 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaggaaattttcattataattatttgttttagaatctaaagtagagcttgaggatat 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagaggagattttcattataattatttgttttagaatctaaagtagagcttgaggatat 260

                                                                       
Query: 61  cttagaaatgcctcataagaaagagtccccagtttagtatgctaaacaggatctaacagc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttagaaatgcctcataagaaagagtccccagtttagtatgctaaacaggatctaacagc 320

                                                                       
Query: 121 ttttgcagagcataaattttggcagtatactttaatatgagatccatgcatgtggtgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgcagagcataaattttggcagtatactttaatatgagatccatgcatgtggtgata 380

                                                                       
Query: 181 cacagattaccctttagagaggtttcataaaaatgtgaaatgtttgaaaggtagacaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 cacagattaccctttagagaggtttcataaaaatgtgaaatgtttgaaaggcagacaagg 440

                      
Query: 241 aaaaatcaaca 251
           |||||||||||
Sbjct: 441 aaaaatcaaca 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)