BAC Information

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BAC

Clone NameMSMg01-109O09
Chromosome6 (Build37)
Map Location 148,434,163 - 148,565,005
singlet/doubletdoublet
Overlap geneEG622319
Upstream geneCcdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
Downstream geneLOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109O09.T7 (MSMg01no109_o09.b1)MSMg01-109O09.TJ (MSMg01no109_o09.g1)
ACCAG322965AG322966
length704698
length of high quality
(start - end)
195 (85 - 279)240 (82 - 321)
definitionCHROMAT_FILE: MSMg01no109_o09.b1 PHD_FILE: MSMg01no109_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:17 2005CHROMAT_FILE: MSMg01no109_o09.g1 PHD_FILE: MSMg01no109_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,434,163 - 148,434,357)(148,564,767 - 148,565,005)
sequence
CTATTTCTTGNCCTCTCTATAATTGCGGCCGCTAAACGATCACTTTCAAA
AGAGGAGCCGCGGAATTCCACTTTCCATAATCAAAAGTTCTAATCAGCCC
ACCAGACTTGTAGTTTACAAACACAGTTGTGGCTTTTTCCTGGCAATTTC
AGTTCTAAGCTATACAAGGTTACCAACTGAATCCTGTAACATAAGTGGTT
GGTTGGTCCTGGTGCATCTCGGATCTAGGATGAGATCATTACAGTAAAAA
AAGCTTAAATTCCACAGTCAATTGCAATAGAGCAGACACCTTACTTGGGT
CTTATCCATCCTTCTCATGTGTTTTGTTTCTCATCATAGAGGACAGATTT
TAGTTCTTTTGTTGTTATTGTGTCTTTGCCTCTCGAGACAGGGTCTTCTT
CTGCAGGTCAGGCTGGTTTGGCCTGTGTGGTGTTTCTAGACCTGATCTCA
AACTTTTGACATTCCTTCTGCCTCATTCTTCTGAACTCCACAACCATATT
TATGCTTCTCGCTTGACTTCAGCTATTTCCGATGCAAATGCTGTGTATCT
TATTGCTATGATTCTTACCCATTACTCTACCTCGCACCACGCAATTATTC
TCTCCGCCCTTTATTCTGCTCTTGTCCGCTTCCTCCGAACCCACTTGCCC
ATTCATCTTCTATATTCTCTGTTTTTATCTTTCTGTTTAACCCTCCCGTC
TCAT
CACGGGCTTTTCTCGATGATGTGTGAGCCTGGCGGCGCCTTTTCAAGAAG
GGAGGTGACCTATAGATTGCCACGAGGAATCACTTTATGTAAGCCATCAG
AGCAAGCACTTTACACATGATTTAATTCCTCTGGGACCTGGTGAGGCAGA
CGTTTTAAAGGATTAGTAGGAGGATTTGAGAGTTTAGAGAATTTTCTTAG
AGTCACCCTGCTAGGAAGCAGAAGGCCCAGAATAGTGAAGTGTCCCTGAG
AATTGGTGTTGCTGGGTTGGAAGAAGTGGAACTGGTATGAGGCAGAGCTT
GACAGCCTTCTGGTTTGCGGTTTTCTCTAAGCATGGTGTTTACAACGGCA
GTTCACATGTCCTTGTTAGGTACCCCCATGCCCATTAGGAGCCCCTCAGA
GCTTAGAGGATGGACCCCTCCCTAATGAAATCTACTTCTGGCTTTGGACC
TTCTTATCTGCTCCAAAGATGAGAACATTATGTCCTGTCATCTCCTTCTG
TTCGAGTCATTCCAGTTGAGGGCTGTCATTCTCCTAGCTTGAAGTCCATC
CTCTGCCGAAGCTTGATTTTTCCATTGTCTTGCTAATCTGATATTATGTA
TTGTTTTCTCCTTTATGACTATATGCTCTTTACCCTTCTCTGACATCTCA
TCCCAGGGCAGTTACTTGGTTGATTTCTTCCGTCTCTTAATACCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_o09.b1 MSMg01no109_o09.b1 CHROMAT_FILE:
MSMg01no109_o09.b1 PHD_FILE: MSMg01no109_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:17 2005
         (195 letters)



>mm_chr6_148433963_148434557
          Length = 595

 Score =  362 bits (187), Expect = e-104
 Identities = 193/195 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagttctaatcagcccaccagacttgtagtttacaaacacagttgtggctttttcctggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 aagttctaatcagcccaccagacttgtagtttacaaacacagttgtggctttttcctggt 260

                                                                       
Query: 61  aatttcagttctaagctatacaaggttaccaactgaatcctgtaacataagtggttggtt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttcagttctaagcaatacaaggttaccaactgaatcctgtaacataagtggttggtt 320

                                                                       
Query: 121 ggtcctggtgcatctcggatctaggatgagatcattacagtaaaaaaagcttaaattcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcctggtgcatctcggatctaggatgagatcattacagtaaaaaaagcttaaattcca 380

                          
Query: 181 cagtcaattgcaata 195
           |||||||||||||||
Sbjct: 381 cagtcaattgcaata 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no109_o09.g1 MSMg01no109_o09.g1 CHROMAT_FILE:
MSMg01no109_o09.g1 PHD_FILE: MSMg01no109_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:17 2005
         (240 letters)



>mm_chr6_148564567_148565206
          Length = 640

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttatgtaagccatcagagcaagcactttacacatgatttaattcctctgggacctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 actttatgtaagccatcagagcaagcactttacacatgatttaattcctctgggacctgg 380

                                                                       
Query: 61  tgaggcagacgttttaaaggattagtaggaggatttgagagtttagagaattttcttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgaggcagacgttttaaaggattagtaggaggatttgagagtttagagaattttcttaga 320

                                                                       
Query: 121 gtcaccctgctaggaagcagaaggcccagaatagtgaagtgtccctgagaattggtgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtcaccctgctaggaagcagaaggcccagaatagtgaagtgtccctgagaattggtgttg 260

                                                                      
Query: 181 ctgggttggaagaagtggaactggtatgaggcagagcttgacagccttctggtttgcgg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctgggttggaagaagtggaactggtatgaggcagagcttgacagccttctggtttgcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)