BAC Information

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BAC

Clone NameMSMg01-110B03
Chromosome6 (Build37)
Map Location 133,121,104 - 133,121,726
singlet/doubletsinglet
Overlap genenone
Upstream genePrb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
Downstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110B03.T7 (MSMg01no110_b03.b1)MSMg01-110B03.TJ (MSMg01no110_b03.g1)
ACCAG323089AG323090
length716691
length of high quality
(start - end)
487 (61 - 547)619 (73 - 691)
definitionCHROMAT_FILE: MSMg01no110_b03.b1 PHD_FILE: MSMg01no110_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:31 2005CHROMAT_FILE: MSMg01no110_b03.g1 PHD_FILE: MSMg01no110_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTTATTNCNTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCTACACTAAACCTGTCTGGTCCTGGACTTTT
TTTGGATGGGAGACTATTAATGACTGCTTCTATTTCTTTAAGGGATAGAG
GAGTGTTTAGATAATTAACCTGATCTTGATTTAACTTTGGTGCCTGGTAT
CTGTCTAGAAACTTGTCCATTTCATTCAGGTTCTCCAGTTTTGTTTAGTA
TAGCCTTTTGTAGAAGGATCTGATGGAGTTTTGGATTTCTTCAGGGTCTG
TTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATTAGGATGCTTTCC
CAGTGCCCTCTAGTGAGTCTGGCTAAGGGTTTATCTATCTTGTTGATTTT
CTCAAAGAACCTGCTCCTCATTTGGTTGATTCTTTGAATAGTTCTTCTTG
TTTCCACTTGGTTGATTTCGCCCCTGAGTTTGATTATTTCCTGCCTTCTA
CTCCTCTTCTGTGAATTTGCTTCCTTTTGTTCTAGAGCTTTTATGTGTGT
TGTCAAGCTGCTAATGTGTGCTCTCTCTAGTTTGTTTTGGAGGCACTCAG
AGCTATGAGCTTTCCTCCTAGAAATGCTTTCATTGTGTTCCATAAGTTTG
AGCATGCTGGGGCATTCCTTTTAACCCCACCCCCAAAAGTTTTTACATTC
CTTCCCTAATTCTTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCACAGCAAAATCAATTTTAGTTTCC
CTTTCCAGGTTTATCCTTGCTTCCCTTTTGAGTCTTCTTTATTAATTAGC
TTTTCTGAGATCTGTGTCCACATTTTATTTGATTCTGTGTTTTGGACTCC
ATTCTGACAAGTTTAATAGCAGGGTTGTTTCATAAGTTTTCTCTTCCGTG
TGCTGCTTTTGTTTTTTTATTAGTTATCTGGGTTGTTAAATGATAGAAAA
AACAAGGGGCAAGGCTATTAGAAAGGCTGTTTCATAAATATTCGCTTTTG
GATATTAATTCTGTGTACTTTTTACTTCTCTGAATTATTGAGAGAAGGAA
ATATGAGGACTATCTTTTGATCTTTTAAAAAACAGTGGTCTTCTGAATGT
GGCCTCAGCATAACTACATATAACCAGTAGGGGGCAGGCCTTCAACAGGC
AGAGGCAGAGTAATCTCAAGTGAGAATTAATTCAAACAGGAATTGAAAAG
GCCCATGCAATTAAATTTCACTCTGAAATTATTACAGAAATATTATCTTC
ATATGAGGCAGTGCTAACACAGTACATTACAATATTACAAAATAAGGTGT
CATTTTTCGTTATTTTCTAAACTCTAATATCTGGATATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_b03.g1 MSMg01no110_b03.g1 CHROMAT_FILE:
MSMg01no110_b03.g1 PHD_FILE: MSMg01no110_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:31 2005
         (619 letters)



>mm_chr6_133120908_133121926
          Length = 1019

 Score =  944 bits (488), Expect = 0.0
 Identities = 587/624 (94%), Gaps = 10/624 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   acagcaaaatcaattttagtttccctttccaggtttatccttgcttcccttttgagtctt 64
           ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 197 acagcaaaatcaattttagattccctttccaggtttatccttgcatccctcttgagtctt 256

                                                                       
Query: 65  ctttattaattagcttttctgagatctgtgtccacattttatttgattctgtgttttgga 124
           |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 257 ctttattaattagcttttctgagatctgcgtccacattttattgggttctgtgttttgga 316

                                                                       
Query: 125 ctccattctgacaagtttaatagcagggttgtttcata-agttttctcttccgtgtgctg 183
           | |||||||| ||||||||||||||||||||||||||| | ||||| |||||||||||||
Sbjct: 317 caccattctgccaagtttaatagcagggttgtttcataca-ttttcacttccgtgtgctg 375

                                                                       
Query: 184 cttttgtttttttattagttatctgggttgttaaatgatagaaaaaacaaggggcaaggc 243
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 376 cttttgtgtttttattagttatctgggttgttaaattatagaaaaaacaaggggcgaggc 435

                                                                       
Query: 244 tattagaaaggctgtttcataaatattcgcttttggatattaattctgtgtactttttac 303
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 436 tattagaaaggctgtttcataaatattctcttttggatatcaattctgtgtactttttac 495

                                                                       
Query: 304 ttctctgaattattgagagaaggaaatatgaggactatcttttgatcttttaaaaaacag 363
           ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 496 ttctctggattattgagagaaagaaatatgaggactatcttttgatcttttaaaaaactg 555

                                                                       
Query: 364 tggtcttctgaatgtggcctcagcataactacatataaccagtagggggcaggccttcaa 423
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 556 tggtcttctgaatgtggcctcagcatagctacatataaccagtagggggcaggccttcaa 615

                                                                       
Query: 424 caggcagaggcagagtaatctcaagtgagaattaattcaaacaggaattgaaaaggccca 483
           |||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 616 caggcaaaggcagattaatctcaagcgagaattaattcaaacaggaattgaaagggccca 675

                                                                       
Query: 484 tgcaattaaatttcactctgaaatt--attacag------aaatattatcttcatatgag 535
           |||||||||||||||||||||||||  ||| |||      ||||||| ||||||||||||
Sbjct: 676 tgcaattaaatttcactctgaaattttattccagttagagaaatattttcttcatatgag 735

                                                                       
Query: 536 gcagtgctaacacagtacattacaatattacaaaataaggtgtcatttttcgttattttc 595
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 736 gcagtgctaacacaatacattacaatattacaaaataaggtgtcatttttcattattttc 795

                                   
Query: 596 taaactctaatatctggatatggt 619
           ||||||||| ||||||||||||||
Sbjct: 796 taaactctattatctggatatggt 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)