BAC Information

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BAC

Clone NameMSMg01-110F14
Chromosome6 (Build37)
Map Location 74,425,981 - 74,426,253
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043338
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110F14.T7 (MSMg01no110_f14.b1)MSMg01-110F14.TJ (MSMg01no110_f14.g1)
ACCAG323298AG323299
length799715
length of high quality
(start - end)
281 (43 - 323)598 (73 - 670)
definitionCHROMAT_FILE: MSMg01no110_f14.b1 PHD_FILE: MSMg01no110_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:54 2005CHROMAT_FILE: MSMg01no110_f14.g1 PHD_FILE: MSMg01no110_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTAACTAGGTTGTTTCTCATTTTATGAGAAGTGATTTCCTGGCTATA
TTATCTTCAAAGTTTACTGGAGATCATGAAAGGGAAGCTCATGTATTTCA
GATAATGGGAGGTCAAAGGTGTGGTCTTACCTGTTGTACACTGCAGTCCT
GAAATTTATTCCCCAAACAAAACAAAAACAAGTCAACCAACAAACTAAGC
ACTCTATGAGTGAATCTGCTATCTTTTTACTGTGCTGTGAATATATAGGT
TTTGTTTGTTTGTTTGTTTGCTTTCTCTCCNAAAAACCCCTGATTATTTT
TTTCTATTTTCCCCCCCCCCCTCTTCTCATTTACTTTCCTTTCTTATCTT
TATTTCTCTCTTTTTTTCTTTTTTTTTTTTTCTTCTCCACCCTCCTCTAC
ATTTTTACACTTTTACTTACTTTATCTTCATATTTTATCCTTCACAATTT
CCCCAACTTATATATTTCACTTTTATTTCACCTTTCTTCTTCTATCTTTT
TTTACCCCCTACTAATACTTTTTTTCACTTATTCCCTTATTTTTCTTCCT
CTTTTACTTCTCCACTATTAGCCCCATCTTTTCTTATCATACCTCTCCCC
TCGTTATTTTCATTATTCTTTCTTTTTCCCTCTACACATATACAATATTT
CATTAACTCTTCATATCCACTCTTTCAAACATACCATCATGTGTACAACC
CATTTATTATTTACATCTTGCCTCTCCCACTTATTCTCTCTCTTCTTTT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGG
ATATTAGCCCCAAACCTAGGATATCCAAGATATAAGATATAATTTGCTAA
ACACATGAAACTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_f14.b1 MSMg01no110_f14.b1 CHROMAT_FILE:
MSMg01no110_f14.b1 PHD_FILE: MSMg01no110_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:54 2005
         (281 letters)



>mm_chr6_74425797_74426476
          Length = 680

 Score =  491 bits (254), Expect = e-143
 Identities = 269/274 (98%), Gaps = 1/274 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtaactaggttgtttctcattttatgagaagtgatttcctggctatattatct 64
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 457 gaattctgtaactaggttg-ttctcagtttatgagaagtgatttcctggctatattatct 399

                                                                       
Query: 65  tcaaagtttactggagatcatgaaagggaagctcatgtatttcagataatgggaggtcaa 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 398 tcaaagtttactggagatcatgaaagggaatctcatgtatttcagataatgggaggtcaa 339

                                                                       
Query: 125 aggtgtggtcttacctgttgtacactgcagtcctgaaatttattccccaaacaaaacaaa 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 338 aggtgtggtcttacctgttgtacactgcagtcctgaagtttattccccaaacaaaacaaa 279

                                                                       
Query: 185 aacaagtcaaccaacaaactaagcactctatgagtgaatctgctatctttttactgtgct 244
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aacaagtcaacccacaaactaagcactctatgagtgaatctgctatctttttactgtgct 219

                                             
Query: 245 gtgaatatataggttttgtttgtttgtttgtttg 278
           ||||||||||||||||||||||||||||||||||
Sbjct: 218 gtgaatatataggttttgtttgtttgtttgtttg 185


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space:   182512
Effective search space used:   182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)