Query= MSMg01no111_c05.b1 MSMg01no111_c05.b1 CHROMAT_FILE:
MSMg01no111_c05.b1 PHD_FILE: MSMg01no111_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:04 2005
(592 letters)
>mm_chr6_28788397_28789388
Length = 992
Score = 1009 bits (522), Expect = 0.0
Identities = 563/592 (95%), Gaps = 24/592 (4%)
Strand = Plus / Minus
Query: 1 tcagacagacgtggcacatgactttaatcccagcattccagaggcaggagcatgtggatc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 tcagacagaggtggcacatgactttaatcccagcattccagaggcaggagcatgtggatc 871
Query: 61 tagagtgagttccaggacagctagagctacacagagaaaccctgcttcaaaatcaatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tagagtgagttccaggacagctagagctacacagagaaaccctgcttcaa---------- 821
Query: 121 tcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatctgtataacacaaacaaaa 180
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 820 --------------aatcaatcaatcaatcaatcaatcaatctgtataaaacaaacaaaa 775
Query: 181 acaatacatactattattagtgtttgctgagacggtcatgaattccaaaacttccttgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 acaatacatactattattagtgtttgctgagacggtcatgaattccaaaacttccttgta 715
Query: 241 ctccaataagataaaagaagttgactactttacacaggaaggatctgaagcttaaggatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctccaataagataaaagaagttgactactttacacaggaaggatctgaagcttaaggatt 655
Query: 301 tacacatacacagtacaaagcctatctgagattcaggttcaagtttgtctgattccagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tacacatacacagtacaaagcctatctgagattcaggttcaagtttgtctgattccagag 595
Query: 361 attcctcatggccaccactgtgctctaacacttgacggcatgtacatgtacacactgcat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 594 attcctcatggccaccactgtgctctaacacttgacggcatgtacatgtacacactgcgt 535
Query: 421 gtaatcttgtagactgtagttagggtacatgagtggcttcaacagatacatcacatgcgc 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 534 gtaatcttgtagactgtagttagggtacatgagtagcttcaacagatacatcacatgcgc 475
Query: 481 atctgtgaagcaattaattttaggtgtggagccctgattcataacctagtttgcacggat 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 474 atctgtgaagcaattaattttaggtgtggaaccctgattcataacctagtttgcacggat 415
Query: 541 tatcctggtgggccctaaattcaaccagaagtgtccctctaacttacagaca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tatcctggtgggccctaaattcaaccagaagtgtccctctaacttacagaca 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_c05.g1 MSMg01no111_c05.g1 CHROMAT_FILE:
MSMg01no111_c05.g1 PHD_FILE: MSMg01no111_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:04 2005
(579 letters)
>mm_chr6_28620776_28621753
Length = 978
Score = 1054 bits (545), Expect = 0.0
Identities = 572/583 (98%), Gaps = 5/583 (0%)
Strand = Plus / Plus
Query: 1 tgtgtttgaatgtttcattcctggatggtacagtttggtagttggttggttggttggt-- 58
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 197 tgtgtttgaatgtttcattcctggatgatacagtttggtagttggttggttggttggttg 256
Query: 59 --ggtcgggagaacacatgtagagatcagaggacaacttcaggagtctgttctccttcat 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtggtcgggagaacacatgtagagatcagaggacaacttcaggagtctgttctccttcat 316
Query: 117 cttggattttggagatcaaatccaggtcttcaggcttgccaaggaaagggttttaggcta 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttggattttggagatcaaatccaggtcttcaggcttgccaaggaaagggttttaggcta 376
Query: 177 aaccatctctccacccactttgggtttgtttctatgtacccagaagtaggatctaaaagt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaccatctctccacccactttgggtttgtttctatgtacccagaagtaggatctaaaagt 436
Query: 237 ttccctcctttccttgttctagaagcttggtgataaaggtatgttttccctagcaggtgg 296
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 437 ttccctcctttccttgttctagaagcttggtgataaaggtaggttttccctagcaggtgg 496
Query: 297 acctccaggcttgctttctgcatcccacaggaagggcttggcttgttcttcatcttagtt 356
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 497 acctccaggcttgctttctgcatcctacaggaagggcttggtttgttcttcatcttagtt 556
Query: 357 tgtgtttacttttctccttttacccctgaattttctttaaatagacctcaaataatattg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgtgtttacttttctccttttacccctgaattttctttaaatagacctcaaataatattg 616
Query: 417 tagaaaattgagtcattaataaaatccaagcatttagcttatattcagaaataatctgta 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tagaaaattgagtcattaataaaatccaagcatttagcttatattcagaaataatctgta 676
Query: 477 ttaacaaccctttatctggtttaatgcttatttattttaaaccactgtggagagaggagg 536
|||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 677 ttaagaaccctttatctggtt-aatgcttacttattttaaaccactgtggagagaggagg 735
Query: 537 attttgccgacgcaaagattgtcttgtatgtgggtggtagggc 579
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 attttgccgacgcaaagattgtcttgtatgtgggtggtagggc 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space: 550792
Effective search space used: 550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
