Query= MSMg01no111_m06.b1 MSMg01no111_m06.b1 CHROMAT_FILE:
MSMg01no111_m06.b1 PHD_FILE: MSMg01no111_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:30 2005
(761 letters)
>mm_chr6_54218501_54219661
Length = 1161
Score = 1330 bits (688), Expect = 0.0
Identities = 740/760 (97%), Gaps = 8/760 (1%)
Strand = Plus / Minus
Query: 6 tgttctaattccttctattctacagaggaaaacacatgaacaatgagcttaaattccaag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 tgttctaattccttctattctacagaggaaaacacatgaacaatgagcttaaattccaag 1102
Query: 66 gcctcaaatctgacaggtgggcagtctgctatatttaaggaaatctaggctttcccttcc 125
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1101 gcctcaaatctgacaggtgggcagtctgctatatctaaggaaatctaggctttcccttcc 1042
Query: 126 accgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaac 185
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 actgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaac 982
Query: 186 tctgtctcgagaaaaaaaaaatacacatagcaaagatttaccatttggccactttaacac 245
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 cctgcctcgagaaaaaaaaaatacacatagcaaagatttaccatttggccactttaacac 922
Query: 246 aagcagcctggcgtgtggtctggaggggttttc-accctccccatgtcctctcagaagaa 304
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 921 aagcagcctggcgtgtggtctggaggggttttcga-cctccccatgtcctctcagaagaa 863
Query: 305 gtgtctactgatgattccctaggcagttaagtgcagctatcaatatgcaacggatacact 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gcgtctactgatgattccctaggcagttaagtgcagctatcaatatgcaacggatacact 803
Query: 365 cagtacatcccgattcccaccctcccccataatgagaattggaatcctatgtttagagtc 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cagtacattccgattcccaccctcccccataatgagaattggaatcctatgtttagagtc 743
Query: 425 tctctctggtgtttttctccatgttcagaatcttgcatctaggaaggagtccagtagcaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tctctctggtgtttttctccatgttcagaatcttgcatctaggaaggagtccagtagcaa 683
Query: 485 gaaagcaatgagatgt---cagatgaagaagggggaggatgggtaagtagctgaaaagat 541
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 682 gaaagcaatgagatgttgtcagatgaagaagggagaggatgggtaagtagctgaaaagat 623
Query: 542 gtgaggaccagccatttgggatgcttagcatcacaaaggaagtgaggaccttacatgttt 601
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 622 gtgaggaccagccatttgggatgcttagcatcacagaggaagtgaggaccttacacgttt 563
Query: 602 atgagatcactggctgcttccccactcattcttaacaagccgatctctcagtctccagca 661
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 562 atgagatcactggctgcttccccactcattcttagcaagccgatctctcagtctccagca 503
Query: 662 gccatgaccctcagaccttacctgaagatttctgaagtagtgatttaccattggcttatt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gccatgaccctcagaccttacctgaagatttctgaagtagtgatttaccattggcttatt 443
Query: 722 attttcctacagaccacaagtgtgtcctggcgatgcattt 761
|||||||||||||| |||||| |||||| |||||||||
Sbjct: 442 attttcctacagac---aagtgtatcctggtgatgcattt 406
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 761
Length of database: 1161
Length adjustment: 10
Effective length of query: 751
Effective length of database: 1151
Effective search space: 864401
Effective search space used: 864401
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_m06.g1 MSMg01no111_m06.g1 CHROMAT_FILE:
MSMg01no111_m06.g1 PHD_FILE: MSMg01no111_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:30 2005
(726 letters)
>mm_chr6_54156277_54157399
Length = 1123
Score = 1181 bits (611), Expect = 0.0
Identities = 689/739 (93%), Gaps = 42/739 (5%)
Strand = Plus / Plus
Query: 1 agagaagagaggacttaagcaagtatgtttgccgacttgccccctaagtgccccacccca 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 agagaagagaggacttaagcaagtatgtttgctgacttgccccctaagtgccccacccca 260
Query: 61 gagttagcagcaccattgtcttccctttgattctg-ttctattgggcagctcaagctcct 119
||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 261 gagttagcagcacaattgtcttccctttgattc-gattctattgggcagctcaagctcct 319
Query: 120 tgggcttaggagaaatatggagaatttaaagacagtcagaggggatgaggcagatgagct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgggcttaggagaaatatggagaatttaaagacagtcagaggggatgaggcagatgagct 379
Query: 180 aagggctggaggttaagagagcaaggcttctttagtttgaggaagaacacgcaatcaagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagggctggaggttaagagagcaaggcttctttagtttgaggaagaacacgcaatcaagg 439
Query: 240 ggccgagactgcttttaataatcaatccgtgttctacagagaggagtcagagttcttgat 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 440 ggccgagactgcttttaataatcaatccgtgttctccagagaggagtcagagttcttgat 499
Query: 300 tgcactgaagaccaatcgagtaaaacagcataatttgaggggaaaagaaaaaagaaaaaa 359
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 tgcactgaagaccaatcgagcaaaacagca-aatttgaggggaaaagaaaaaagaaaaaa 558
Query: 360 aaaaagatttaaggttagattataagataaagtttccatctgtgagtaaatcctggactt 419
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaa--gatttaaggttagattataagataaagtttccatctgtgagtaaatcctggactt 616
Query: 420 tgatttccctttacaaggcttttgttttgttttgttttgttttgttttgttttgtttttg 479
||||||||||||||||||||||||||||||||| ||
Sbjct: 617 tgatttccctttacaaggcttttgttttgtttt-------------------------tg 651
Query: 480 ttttaaatatgtcacctggttgtaagaaatattagaaggagggaaatgcatgcagggtaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttttaaatatgtcacctggttgtaagaaatattagaaggagggaaatgcatgcagggtaa 711
Query: 540 tttcatttaaaacacatacacatagacacacacacagagatagacacacacgcacacacg 599
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 712 tttcatttaaaacacatacacacagacacacacacagagatagacacacacacacacaca 771
Query: 600 ca------------gtgtattttgtatttttaagtaagcttataaaataatgttttcctg 647
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cacacacacacacagtgtattttgtatttttaagtaagcttataaaataatgttttcctg 831
Query: 648 tgattttccagacatccttagtgttatttatctttccttacctcgaaccctgtgctcccc 707
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tgactttccagacatccttagtgttatttatctttccttacctcgaaccctgtgctcccc 891
Query: 708 cctcccccaccacagtacc 726
|||||||||||||||||||
Sbjct: 892 cctcccccaccacagtacc 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 1123
Length adjustment: 10
Effective length of query: 716
Effective length of database: 1113
Effective search space: 796908
Effective search space used: 796908
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
