BAC Information

Click to search

BAC

Clone NameMSMg01-111O07
Chromosome6 (Build37)
Map Location 118,578,330 - 118,578,661
singlet/doubletsinglet
Overlap geneCacna1c
Upstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111O07.T7 (MSMg01no111_o07.b1)MSMg01-111O07.TJ (MSMg01no111_o07.g1)
ACCAG324448AG324449
length1,1941,177
length of high quality
(start - end)
332 (129 - 460)743 (80 - 822)
definitionCHROMAT_FILE: MSMg01no111_o07.b1 PHD_FILE: MSMg01no111_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:47 2005CHROMAT_FILE: MSMg01no111_o07.g1 PHD_FILE: MSMg01no111_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTCTTTNNNNNGGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTAGGGTCCTTTCTCCCTTTAAGCTGCTCCCAGCAGGGC
TGGGTAGGCTGCACTACCCTTAAAGAAGGCATAAGGGCTCTGACCAGCTC
GCAGGGCTTTGGAACACAGTCGGTTGCTCACGTGAGAGGGGGTCGGGGGA
GGACAAGGGTATAAGTTCTTGTTCTCAGGCATGGGAGCAATGGCACTGTG
CCTCCAGAGATCTGGCCAGGCCTGTGTCTGTACCCGAAAGCTCCTTCAGA
CTAAGACACCAGTCATGAACTTTTGGCCCTAGACTCTAAGCAGCCCAGAA
ATTCTAACCCCTCCTCAGCTCCCCATGCCTCATTGCTGCCTCTATCTCTT
TTTCTCTATCCATGATCACACAGCAGATACCCTGTGTGGCACTCCACAGT
AGTCACGTACCATGCTCAGCCTTTCCTGGGACTCAGTGCAGATCCCTTTT
CTGCCTTGTCCTAGGGGCATCCCCAGGTCTCCAGACTGTGGACCTCTAGG
GAAGGTCACAGCCTCTGAGGCTACGAGAGGGCAGCCATTCCAGAGACTGT
AATGAAGTCTGGGACTGTGGCCCTCCCCTTATAATACAGAAGCCACTACC
ACCATTTCCCAGCAGCCATTTGGGCCAGGTTCCTGGAAAATAGAAAGTGG
AGACTGAGAGAAGTGAGACTTGAATGGCCAGAGTATGCTCAGAGGCAATG
TCAGACAGCTGTGTGGGATGTCACCACCATCTAGCCTCCTGACAGAGCCA
AGTTCCACCCGCAAGGCAGAACTGAGAAGATAAGAACTTCTGGGTTGCTT
TCTCCCAACACAGGAGGGCAGGAGCCCCTGGGGCAGTAGCTCTCTGGGCT
CAAATCCCAAAGCTTATAATATGTGAAGAACTTGGAGTTATGGGAAAAGA
CCAGGAATAGGAAAAACAAAGTCTTGTACTCAGGGCTGTGACCGTACCAT
AGACCCTTAAGGATGGGCCTGCTGGACCCTAGGAAAAAAGGGTGTTGTGG
CCTTCCCCCTTCCCAGAAAAGTCTTGGGGCCCAAAAAAAAGAAGTCTAAG
TGGCAGATGGGCCCCTCACCCTGTGGCCTGCCCTCCCTTTTCAACCCAAG
GGGCTTGGTTTCTCAAAAAGGAAACCCTTTTCTTGGCCCACCCN
NNNNCCCCCACGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTATTCATTTACAATGCTAACAAAATATG
TGAAAATGATCTCTCCAGTATTATAAAGATAGGCAGAAGTATTCTAGAGT
TGAAAGTTCTTTGTTCTGTTTTCTGTCTTCTATGAGTCACACAAGCCATG
CAGAATATAATTTTCTAATGGAAAAGATACATTCAATATTCATCATCCCA
TGTCCTCCTCGGGACAGCTTTGCAAGTTCTGTGCATGGCACCTGAGTTTT
TGACCCTGACTATGCTATGAACTCATTTTTATTATCACGTTAACACAATC
TTTGATGAGTCTTAGGCAAGGTCAAATCAGGATTACAATCTGAAATATCT
GAGTATAACGTTTTCACTTCTTAGGACATAAACGATACAAATATAATGTG
CACAAAGTTTTCCTTGAAGAAGCCCCATATCCTCCTCTGCCTCACAAGCT
CGACACCATGGGTTACTCTACTGCCACGCCACCTCCCGTAGGATCTGTGT
GACAAGTTCCACAGACTGAGGCGATTGACCTCAAAATGGGGAGGCCTCCT
GGAACCGGTTGCGGAACTCTTTGCCGGAGAAAAAATATTGAGCCGTAGTT
CTCAGGGCAGTCTATCTGTTTTGTTTTCTCTTATTCCTTTTCTTATTTAC
ATGTTCCTGGGAGCCTAGGCCAAGATCTTAAGTGAGAATAATGGGTAAGA
AACCATCCTTAGAGATGGGGTCCCTAACATGACCTTATCCCCAGGGAAAC
CAACGCTTTACTTTCTAAATCATTTACAAAACTATGATGATAGATGATAA
CTTCCCAACAATAAAAATTTCCTAAGTCTACATGTGTGTCCTCAGAGGTA
GGTTTTAGTATATGGTAAAGAAAGCCTTATTTAGAAAGAATTAAAATAAT
TTAAAATTTATGCCTTGAAGATTTATTTTTCAAAAAGCCAGGCCCTAAAT
GTTAAAATAATAATTTGACCCCGGGGCTTGTAGAAGTTTGTTCCAGCAAT
TTAAAAACACTGGATTGTTTAAAAATTTTATTTACCCTGGTCCCTGAAAA
ATATGGCCACTTTCCCCTTGGAATGAATAACCCCCCCACGGAAAAAACCC
CCCTTTTAAAAATTTGTTTTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_o07.b1 MSMg01no111_o07.b1 CHROMAT_FILE:
MSMg01no111_o07.b1 PHD_FILE: MSMg01no111_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:47 2005
         (332 letters)



>mm_chr6_118578130_118578861
          Length = 732

 Score =  619 bits (320), Expect = 0.0
 Identities = 329/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcataagggctctgaccagctcgcagggctttggaacacagtcggttgctcacgtgagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gcataagggctctgaccagctcgcagggctttggaacacagtcggttgctcacgtgagag 473

                                                                       
Query: 61  ggggtcgggggaggacaagggtataagttcttgttctcaggcatgggagcaatggcactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggggtcgggggaggacaagggtataagttcttgttctcaggcatgggagcaatggcactg 413

                                                                       
Query: 121 tgcctccagagatctggccaggcctgtgtctgtacccgaaagctccttcagactaagaca 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 412 tgcctccagagatctggccaggcctgtgtctgtacccgcaagctccttcagactaagaca 353

                                                                       
Query: 181 ccagtcatgaacttttggccctagactctaagcagcccagaaattctaacccctcctcag 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ccagtcatgaacctttggccctagactctaagcagcccagaaattctaacccctcctcag 293

                                                                       
Query: 241 ctccccatgcctcattgctgcctctatctctttttctctatccatgatcacacagcagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 292 ctccccatgcctcattgctgcctctatctctttttctctatccatgatcacgcagcagat 233

                                           
Query: 301 accctgtgtggcactccacagtagtcacgtac 332
           ||||||||||||||||||||||||||||||||
Sbjct: 232 accctgtgtggcactccacagtagtcacgtac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)