BAC Information

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BAC

Clone NameMSMg01-112C14
Chromosome6 (Build37)
Map Location 66,308,955 - 66,388,260
singlet/doubletdoublet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112C14.T7 (MSMg01no112_c14.b1)MSMg01-112C14.TJ (MSMg01no112_c14.g1)
ACCAG324648AG324649
length743746
length of high quality
(start - end)
458 (47 - 504)368 (75 - 442)
definitionCHROMAT_FILE: MSMg01no112_c14.b1 PHD_FILE: MSMg01no112_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:14 2005CHROMAT_FILE: MSMg01no112_c14.g1 PHD_FILE: MSMg01no112_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,308,955 - 66,309,409)(66,387,893 - 66,388,260)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGG
AATTCTTTCCTGTTCCCGGCCTTGCTGAAGATTGCCCTCACTGTCTCACA
TCTTCTGAAGCTGTCAGAAGGGAACACACTGTTTTGAAATGCTATCCAGT
GATTGTTTATTCCTGGTCACTCTCTGGCCTGAAACTCTCCTCCTACTGTG
TGAGGCATCCCGAGCTTCAGAAGGGGGCAGAGGCCAGCCCAGAGCAATGG
AGATGAAATTCAAATTTGGACTTCCAAAGTTGATTGGCTCTCTTTGAGTT
GACAATTTAAAGAATATAATGTCTCAAGGAAAGGGACAGGAGGACCATCC
GAAGTTAAAACTAAAACAATATCAATAAAACACTTTTAAGCCTCAACAGT
CAAAGAAGGGGAGGTTGCTTTGTTTTGTTTTCCCTGACCCACAGAATAAC
GCAAATAAATGAGCTAATGACTGTTTCATCCAAGAGAAAATACATCCTCT
AAGCTACAGAGAAATCCCCAGTGGGGGCAGGAAGAATGCATAGTTCTCTC
TGTGTGTCTCTATGTCTGTCTTTCTCTGCCTCTCTGTCTCTTTTTCTATC
TCAGACTCCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCT
CTCTCTCTGTCTATCTCTATGTCTTTCTGTCTGTCTGTCTGCCTGTCTGT
CTGTCTGCCTGTCTCTTTCTCTCTCTCTCACATAACACTCACA
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTATCTGCTTTTATTCTATTCAACTA
CGAATGAGTCTTTGGTCTGACCCAGTTTCCATTTTCTTCCTTGCAGGCTG
ATTGACAAGTCCAGCAAAGAGCTTGTTCTGATGACTAACTTGATCATCAT
TAGCATCACCTAAGAATGTCTTCAGAGCAGAAGACTTGTGTCACATTCCC
ACACTGGGAGGATGACATTCTTATGTAAGGAGTGAAGGCTGACTTTTTAT
TTTATTTTAATTTTTAATTTTTAATTTATTTTTATTTATTCTTTGTTTCC
AGTCCAGACTTTATCCTCCTACTGGTCTACCCAATCAGGTATTGGGTGGG
GGGAAACAGGACCGAATCCCTGAGGGTCAGCAGAAAGAATAGAAACATGG
CAATCTCTGGGGGGTAAGAGGTGGGGGTCCCTCTAGAATGTACCAGAGAC
CTGAGAGGTGAGAGACTCAGAGAGGTAGAGACCTTAGATGAAACGCCCCG
ACCGCGTGGAGAGGGAACTTGTAGAGTCCACCTCTTGTATAATGATAGCA
TCACGTGTAGGGATGGGCTTGCCATCCCACAGTCAATATATCTGGCTCAT
ACTTTTTCCTGCCTGAAAGAATTGCAGGGACTAAAATTGGATAATAGACT
GACCCACCATGAGGTTCATTCGACTGGTCCAAATTGTGAACCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_c14.b1 MSMg01no112_c14.b1 CHROMAT_FILE:
MSMg01no112_c14.b1 PHD_FILE: MSMg01no112_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:14 2005
         (458 letters)



>mm_chr6_66308752_66309609
          Length = 858

 Score =  841 bits (435), Expect = 0.0
 Identities = 450/455 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctttcctgttcccggccttgctgaagattgccctcactgtctcacatcttctgaa 63
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttcctggtcctggccttgctgaagattgccctcactgtctcacatcttctgaa 263

                                                                       
Query: 64  gctgtcagaagggaacacactgttttgaaatgctatccagtgattgtttattcctggtca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctgtcagaagggaacacactgttttgaaatgctatccagtgattgtttattcctggtca 323

                                                                       
Query: 124 ctctctggcctgaaactctcctcctactgtgtgaggcatcccgagcttcagaagggggca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctctggcctgaaactctcctcctactgtgtgaggcatcccgagcttcagaagggggca 383

                                                                       
Query: 184 gaggccagcccagagcaatggagatgaaattcaaatttggacttccaaagttgattggct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaggccagcccagagcaatggagatgaaattcaaatttggacttccaaagttgattggct 443

                                                                       
Query: 244 ctctttgagttgacaatttaaagaatataatgtctcaaggaaagggacaggaggaccatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctctttgagttgacaatttaaagaatataatgtctcaaggaaagggacaggaggaccatc 503

                                                                       
Query: 304 cgaagttaaaactaaaacaatatcaataaaacacttttaagcctcaacagtcaaagaagg 363
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgaagttaaaactaaaacaataacaataaaacacttttaagcctcaacagtcaaagaagg 563

                                                                       
Query: 364 ggaggttgctttgttttgttttccctgacccacagaataacgcaaataaatgagctaatg 423
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 ggaggttgttttgttttgttttccctgacccacagaataacgcaaataaatgagttaatg 623

                                              
Query: 424 actgtttcatccaagagaaaatacatcctctaagc 458
           |||||||||||||||||||||||||||||||||||
Sbjct: 624 actgtttcatccaagagaaaatacatcctctaagc 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no112_c14.g1 MSMg01no112_c14.g1 CHROMAT_FILE:
MSMg01no112_c14.g1 PHD_FILE: MSMg01no112_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:14 2005
         (368 letters)



>mm_chr6_66387842_66388609
          Length = 768

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatctgcttttattctattcaactacgaatgagtctttggtctgacccagtttccattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctatctgcttttattctattcaactacgaatgagtctttggtctgacccagtttccattt 360

                                                                       
Query: 61  tcttccttgcaggctgattgacaagtccagcaaagagcttgttctgatgactaacttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcttccttgcaggctgattgacaagtccagcaaagagcttgttctgatgactaacttgat 300

                                                                       
Query: 121 catcattagcatcacctaagaatgtcttcagagcagaagacttgtgtcacattcccacac 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 299 catcattagcatcacctaagaatttcttcagagcagaagacttgtgtcacattcccacac 240

                                                                       
Query: 181 tgggaggatgacattcttatgtaaggagtgaaggctgactttttattttattttaatttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 239 tgggaggatgacattcttatgtaaggagtgaaggctgactttttattttatttttatttt 180

                                                                       
Query: 241 taatttttaatttatttttatttattctttgtttccagtccagactttatcctcctactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 taatttttaatttatttttatttattctttgtttccagtccagactttatcctcctactg 120

                                                                       
Query: 301 gtctacccaatcaggtattgggtggggggaaacaggaccgaatccctgagggtcagcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gtctacccaatcaggtattgggtggggggaaacaggaccgaatccctgagggtcagcaga 60

                   
Query: 361 aagaatag 368
           ||||||||
Sbjct: 59  aagaatag 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)