BAC Information

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BAC

Clone NameMSMg01-112M10
Chromosome6 (Build37)
Map Location 68,455,614 - 68,455,832
singlet/doubletsinglet
Overlap geneIgk
Upstream geneTacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101
Downstream geneIgkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112M10.T7 (MSMg01no112_m10.b1)MSMg01-112M10.TJ (MSMg01no112_m10.g1)
ACCAG325098AG325099
length719716
length of high quality
(start - end)
219 (65 - 283)68 (56 - 123)
definitionCHROMAT_FILE: MSMg01no112_m10.b1 PHD_FILE: MSMg01no112_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:02 2005CHROMAT_FILE: MSMg01no112_m10.g1 PHD_FILE: MSMg01no112_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATGCGCGGAATTCTTTGTT
TTTCCCAATAACCCATTTTAATAGGGTTATTTGATTTTCTGGAGTCTAGC
TTCTAGGATGCTTATTTACTATAGCAAAAATGATAATATTTAAAATCCAC
AACTTAAACAAATAATACCCTGTAAGGAAAAATGTGCTAACAGAGACAGC
CAGGATGCATATGATAATAAATAGATTTTGTGTAGTTTGCTGACTTAATC
CCTGCTACATAAGAGGAAATATTAATTGTTTGGACCTCAAAAAATTGAGT
CATATTATAATATAGCAGGTACATATAACGATGGATTCCATCCTAAAATA
TAATGCAGAGACTGTGAATCCAAACAGGGTCTTTCATTTAAATTTAAAAA
GAAAAATACAACTCCTAATCTATATTATCACATTAATACTATAAACAGTC
TAATCTGAACATGGAAAAATATATGCATGTATAACTCCCTGAATCACACT
TTCACCATAAACCGATTTTTTACCAAAGTTACTCATCTTAATTTGCCATA
CACCGCCTTTTTAAATTTATATACGGACTCGGCCCATTTAAAATATTTCA
TCCCTCCTCCCCGATTGCCAGGATCTATTACAAGCCGATAACCAGACGTT
TTTTATGTAACTATACGCTGATCTCTCTACCCGTGCATTTATTCAATGGC
TTACCCCTTTACATTAAGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGGTTATGTGCTATTTGACTGACAATCTCTGTCTAACTGGTTGG
GGAGTATTTGGTTTCCATGCTAAGAAGCAGGCCAGGAAACCGGAAAGGAG
TTATTTCCCCTCCTGCGGGTCTCAACTTTTGAGATTTCTGGAGTTTGAAC
ATGTTTGACATCACCAGTCCTGTGGCAGTTTCTCTGTTGCCATGGTATGT
GTCCCATATTCCACACTTCCCCACTTAACTCTCCCCACTCACCAGTCCCT
TTGTCTATTCATACCACCTGAGCCTTTTATGGTTTTACTGCTGTGAACAG
ACACCATGACTAAGGCATCACTTAACACATTGAAAGGACAACATTTATTT
GCGCTGGCTTATAGGTTTATACGCCCCCCATCATTTGCGCCCGCACGTTC
CCATGTAGGCTTTTTTGCCGTATGCCCTCCTGACACTTTCCATATTTTTG
ATTGCACGCTGTCCCCGTATCACCGTTTTTTATGATCCTTTTATGAGGCT
CTCATTTCCTTTGCTCCCGTGTTTTTTTTTCTCCCGATTACCCCCCCCTC
TAGTGTCTCTCTCTGCTTCATGTGTATACCCCGCCTTCTTACCCCGGCGT
GTTTACCTACTCTTTTTTGACCCCCTTTTTCCCCGCGTGCTCTCTTTCGC
TTTCCTTATCCCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_m10.b1 MSMg01no112_m10.b1 CHROMAT_FILE:
MSMg01no112_m10.b1 PHD_FILE: MSMg01no112_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:02 2005
         (219 letters)



>mm_chr6_68455365_68455983
          Length = 619

 Score =  377 bits (195), Expect = e-109
 Identities = 213/219 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttaatagggttatttgattttctggagtctagcttctaggatgcttatttactatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 attttaatagggttatttgattttctggagtctagcttctaggatgcttatttactatag 409

                                                                       
Query: 61  caaaaatgataatatttaaaatccacaacttaaacaaataataccctgtaaggaaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| 
Sbjct: 408 caaaaatgataatatttaaaatccacaacttaaacaaataatagcctgtatggaaaaatc 349

                                                                       
Query: 121 tgctaacagagacagccaggatgcatatgataataaatagattttgtgtagtttgctgac 180
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 348 tgctaacagagccagccaggatgcagatgataataaatagattttgtgtagtttgctgac 289

                                                  
Query: 181 ttaatccctgctacataagaggaaatattaattgtttgg 219
           |||||||||||||||||||||||||| ||||||||||||
Sbjct: 288 ttaatccctgctacataagaggaaatgttaattgtttgg 250


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)