Query= MSMg01no113_j10.b1 MSMg01no113_j10.b1 CHROMAT_FILE:
MSMg01no113_j10.b1 PHD_FILE: MSMg01no113_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:04 2005
(422 letters)
>mm_chr6_15324879_15325700
Length = 822
Score = 719 bits (372), Expect = 0.0
Identities = 408/420 (97%)
Strand = Plus / Plus
Query: 3 ggaattcttttctttttcattatttccacttatgaccacgttttcattaataatttctca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttttctttttcattatttccacttatgaccacgttttcattaataatttctca 262
Query: 63 ttttctattgtcaagtgtcagattagaaaaatatgaattacattcaaaattactattaaa 122
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 263 ttttctattgtcaagtgtcagattagaaaaatatgaactacattcaaaattactattaaa 322
Query: 123 ttttgaattttgccaattaatcattttctgttttcaaagaaacgttatcctgtaaatatg 182
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 ttttgaattttgccaattaatcattttctgttttcaaagaaacattatcctgtaaatatg 382
Query: 183 ttctaaattgtgcatttatataaatattagcttttatttataataaaagtgatttttttc 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttctaaattgtgtatttatataaatattagcttttatttataataaaagtgatttttttc 442
Query: 243 cccagaagacaaagtgaatattttctgaaaggatgctttttgactgtgtgctgcttggta 302
||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 443 cccagaaaacaaagtgaatattttctgaaaggatgcagtttgactctgtgctgcttggta 502
Query: 303 caaagcaagacccttagcagagcaaccctcactgctctgagcatgtgcctctgaggccca 362
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaaagcaagacccttagcagagcgaccctcactgctctgagcatgtgcctctgaggccca 562
Query: 363 agactttcctgggcttctctgctaccctactcctgtttcttctttgcatcttttgtttct 422
||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||
Sbjct: 563 agactttcctgggcttctctgctactctactcctgtttcttctttgtatcttttatttct 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_j10.g1 MSMg01no113_j10.g1 CHROMAT_FILE:
MSMg01no113_j10.g1 PHD_FILE: MSMg01no113_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:04 2005
(499 letters)
>mm_chr6_15474764_15475666
Length = 903
Score = 891 bits (461), Expect = 0.0
Identities = 491/503 (97%), Gaps = 4/503 (0%)
Strand = Plus / Minus
Query: 1 caggcaagccagggttacataataagagtgatcctatctcaaaaataaataagtaaaata 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 caggcaagccagggctacataataagagtgatcctatctcaaaaataaataagtaaaata 644
Query: 61 aaatttgcacactcaatcttcaaatactcatcagaagtaaatgctcatttatattttctt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aaatttgcacactcgatcttcaaatactcatcagaagtaaatgctcatttatattttctt 584
Query: 121 ttgaaaggatgtataaaatatatggtaattaaaatgattctctgtagtcttaaaaagagt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctgaaaggatgtataaaatatatggtaattaaaatgattctctgtagtcttaaaaagagt 524
Query: 181 ggctaatttaataatcagtaggtttctatattttacctgagtatgtgtgtatgtgtgtgc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggctaatttaataatcagtaggtttctatattttacctgagtatgtgtgtatgtgtgtgt 464
Query: 241 aggcagcaaaattatcttggtgatgccttatgtgtttaataatacttagcatttcttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aggcagcaaaattatcttggtgatgccttatgtgtttaataatacttagcatttcttttt 404
Query: 301 gtgtattacactcaagaatttaattcagttttaaaatatatagcttatatgtctttcagg 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 403 gtgtattacactcaagaatttaattcagttttaaaatatatagtttatatgtctttcagg 344
Query: 361 tattgaaatcattgaagctagagaattgctgttgaatgagaaccaaaatatttttaaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tattgaaatcattgaagctagagaattgctgttgaatgagaaccaaaatatttttaaaag 284
Query: 421 ctttgttttatttttat----gtatatggggagcgcccatggatgacaggaaatagtgtt 476
|||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct: 283 ctttgtttaatttttatttatgtatatggggagtgcccatggatgacaggaaacagtgtt 224
Query: 477 agatctcctggacctggtgttac 499
|||||||||||||||||||||||
Sbjct: 223 agatctcctggacctggtgttac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 903
Length adjustment: 10
Effective length of query: 489
Effective length of database: 893
Effective search space: 436677
Effective search space used: 436677
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
