BAC Information

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BAC

Clone NameMSMg01-114I08
Chromosome6 (Build37)
Map Location 68,662,649 - 68,663,049
singlet/doubletsinglet
Overlap geneIgk, Igkv2-93-1
Upstream geneIgkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550
Downstream geneIgkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114I08.T7 (MSMg01no114_i08.b1)MSMg01-114I08.TJ (MSMg01no114_i08.g1)
ACCAG326381AG326382
length706731
length of high quality
(start - end)
627 (39 - 665)402 (77 - 478)
definitionCHROMAT_FILE: MSMg01no114_i08.b1 PHD_FILE: MSMg01no114_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:13 2005CHROMAT_FILE: MSMg01no114_i08.g1 PHD_FILE: MSMg01no114_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
CTAAAATTATCCTAGGAATTATTGAGCCCTTTATAATAGGACAGCAATTG
AGGCCACTGTGATATGAATACTGCCCTGAGAACTCTGGTAGTTTTCATGT
ATCAAGTTTCACTTGCACTAAGCTAGAAAGCAAACAGATTCCCAATTAAA
AAATACATTCCTTGGGGGATGTAAAACAATTAAACAAAGGCTATAAAAGG
GAACAATTTATTGTAGTTACAAGGAAAGAAGATAAAATATTGACTGGGTT
CATCTATATAAAACTTTATTTTTAACTTAGACCTAAGAATTATAGTTGTT
AACTTTCAGTGAACCTATGGTGCTAGTGACAAAAAAAATCAATGTCTAGT
TAGTTAAATACTCTTAACGAAAAAACCTATGTAACCTCTGTTTTAAACTT
ATTCATTTTATGAATTTAATATGTTTAATCTTTTGGTAAACTTTTAAAGT
AGTGTGGGACAGTGAACTGTGCACAGACAGCCTGGTCTCCAGTCAAACAA
AGATCTAGAACTCTAGGGACCTGATGAGTGGTGATTTCCACCTACATGGG
ACGGGTTCAATCATACCTCCTGGACCCCTGGCTCCTGTTGAAGTTACAGC
TCCCACAGCCCCTACAGAAGAGATGTGTGACTATCAGTCACACAGAANAT
GTCCCA
CAATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCAGGGAAGGGACCTGGATGCA
GGAGATGATACAGAGGATATGAAGGGATTTTACTGACTGGTTTGCTCCAC
ATTTGTTTGCTCAGCTAGTATTTTTATGAAACATAGGTTCACCAGCACAG
GGTTAGCACAATCCAAAATGACCAACTGCTTTTGATCACTAATTGATAAA
ATGCCTTACATCTGGATCCCATGGAGGCATTTCCTTAAGGATGCTCCTTT
ATCTCTGATGACTCTAGCTTGTTTCAAGCTGAAACACAAAATAATCTGTA
CAGACAATACATCAGGAGCTCTGGAGCCTCTCCTGACATTGAAAGAACCA
TTGCAAATAAGTATTGCCATCCACTGTGTAACAGAGCTTTACAAGACCTG
AAGGAGATGGAAGCTGACACTGTAGAAGTGACAGGTATGGAGAAAGTAGC
CTGGGTCATCCCCAGCGTCTCTAGATATAGTAGAATTAAAGGGCCATGCA
CAAACATTTTGATACTTTCAAGTGATTTTTTTCCTTTATTTTCTACTTGT
TTTGTTTCATGACTTTCATTCATATCCCAAAACTGTCCCACATAGAAGAC
CTATATAAAGAGAATATGGAGGCTCTCTAGAAATTATCTGGATTATCCCG
TTTGCTACTCGTAAGAGTTACCCCCCGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_i08.g1 MSMg01no114_i08.g1 CHROMAT_FILE:
MSMg01no114_i08.g1 PHD_FILE: MSMg01no114_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:13 2005
         (402 letters)



>mm_chr6_68662449_68663249
          Length = 801

 Score =  632 bits (327), Expect = 0.0
 Identities = 384/403 (95%), Gaps = 3/403 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccagggaagggacctggatgcaggagatgatacagaggatatgaag-ggattttactg 59
           ||||||||||| |||||||||||||||||||| |||||| ||||| || ||||| |||||
Sbjct: 201 aaccagggaagagacctggatgcaggagatgacacagagaatatg-agaggattgtactg 259

                                                                       
Query: 60  actggtttgctccacatttgtttgctcagctagtatttttatgaaacataggttcaccag 119
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 actggcttgatccacatttgtttgctcagctagtatttttatgaaacataggttcaccag 319

                                                                       
Query: 120 cacagggttagcacaatccaaaatgaccaactgcttttgatcactaattgataaaatgcc 179
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 320 cacagggttagcacaatccaaaatgaccaactgctattgatcactaactgataaaatgcc 379

                                                                       
Query: 180 ttacatctggatcccatggaggcatttccttaaggatgctcctttatctctgatgactct 239
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcacatctggatcccatggaggcatttccttaaggatgctcctttatctctgatgactct 439

                                                                       
Query: 240 agcttgtttcaagctgaaacacaaaataatctgtacagacaatacatcaggagctctgga 299
           ||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 440 agcttgtgtcaagctgacacacaaaataatctgtatagacagtacatcaggagctctgga 499

                                                                       
Query: 300 gcctctcctgacattgaaagaaccattgcaaataagtattgccatccactgtgtaacaga 359
           |||||||||| ||||||||||||||||||||||||| |||| |||| |||||||||||||
Sbjct: 500 gcctctcctgtcattgaaagaaccattgcaaataaggattggcatc-actgtgtaacaga 558

                                                      
Query: 360 gctttacaagacctgaaggagatggaagctgacactgtagaag 402
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gctttacaagacctgaaggagatggaagctgacactgtagaag 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 801
Length adjustment: 9
Effective length of query: 393
Effective length of database: 792
Effective search space:   311256
Effective search space used:   311256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)