Query= MSMg01no114_j01.b1 MSMg01no114_j01.b1 CHROMAT_FILE:
MSMg01no114_j01.b1 PHD_FILE: MSMg01no114_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:17 2005
(567 letters)
>mm_chr6_110454971_110455938
Length = 968
Score = 1048 bits (542), Expect = 0.0
Identities = 560/566 (98%), Gaps = 3/566 (0%)
Strand = Plus / Plus
Query: 4 ggaattctatcctctctcc-catataattacagtgacatctcccagggctcatgttgaaa 62
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatcctctcacagcatataattacagtgacatctcccagggctcatgttgaaa 263
Query: 63 tgtgactacaataagaattcaagggttacatttctcacacaaactttttggaagcatgtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtgactacaataagaattcaagggttacatttctcacacaaactttttggaagcatgtt 323
Query: 123 taaattgcagcagacctgaggggaaactgatctggtaatggtgaggaaaaagaactgaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaattgcagcagacctgaggggaaactgatctggtaatggtgaggaaaaagaactgaag 383
Query: 183 ccctgagggccagcagaaaaaatggaaacaggcaaccctgggaaataggaggttaggggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccctgagggccagcagaaaaaatggaaacaggcaaccctgggaaataggaggttaggggg 443
Query: 243 accctccagaatgcaccagagacctgggagaatagagaacccctggactcaaagagaggg 302
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 accctccagaatgcaccagagacctgggagaatagagaacccctgaactcaaagagaggg 503
Query: 303 a-cgttagatgaaatgtcagacagtagggagagggaacttatagaccccacctccagcag 361
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atc-ttagatgaaatgtcagacagtagggagagggaacttatagaccccacctccagcag 562
Query: 362 gaagacaggacatcaagtgagggatgaggttaccatcccacagtcacatctctgacccat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaagacaggacatcaagtgagggatgaggttaccatcccacagtcacatctctgacccat 622
Query: 422 aattgttcctgactgaaagaattacagggatggaaaaggagaggatcctgaggacaagaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aattgttcctgactgaaagaattacagggatggaaaaggagaggatcctgaggacaagaa 682
Query: 482 ggtccagtgatgggcccaaagtgggatccagctcaaggggaggttccaaggcctgacact 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggtccagtgatgggcccaaagtgggatccagctcaaggggaggttccaaggcctgacact 742
Query: 542 attactgaggctatggagcgctcaca 567
||||||||||||||||||||||||||
Sbjct: 743 attactgaggctatggagcgctcaca 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_j01.g1 MSMg01no114_j01.g1 CHROMAT_FILE:
MSMg01no114_j01.g1 PHD_FILE: MSMg01no114_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:17 2005
(450 letters)
>mm_chr6_110589459_110590309
Length = 851
Score = 810 bits (419), Expect = 0.0
Identities = 442/451 (98%), Gaps = 4/451 (0%)
Strand = Plus / Minus
Query: 1 tatcttcagatagaatagaatggagacagaattaaaatggacattcacacttactttaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tatcttcagatagaatagaatggagacagaattaaaatggacattcacacttactttaca 491
Query: 61 ttattaaatatggtcacttttccctggagaaaaagacactattatattttgtgttgtatt 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 490 ttattaaatatggtcacttttccctggagaaaaagacactattacattttgtgttgtatt 431
Query: 121 tttctgagattcgttttttggtagatatatttatgtcatttaactatcatctattcctca 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tttctgagattcattttttggtagatatatttatgtcatttaactatcatctattcctca 371
Query: 181 tatttcttttttcttattgttaaaatatctggtattgcacagaaatacatagtaaaagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tatttcttttttcttattgttaaaatatctggtattgcacagaaatacatagtaaaagcc 311
Query: 241 tctgcaggccaggtcaaaagtcacttcccttgatcgtcttatct-cctttataatggtct 299
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 310 tctgcaggccaggtcaaaagtcacttcccttgatcgtcttatcttcctttataaaggtct 251
Query: 300 attttgctttaggaactcaagtaagtggtacacaagacaagttttagaagattattatta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 attttgctttaggaactcaagtaagtggtacacaagacaagttttagaagattattatta 191
Query: 360 ttattattattattattattattattattattattattattttggtttttctagacaggg 419
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 190 ttattattattattattattattattattattattatt---ttggtttttcgagacagga 134
Query: 420 tttctctgtatagccctagatgtcctggaac 450
|||||||||||||||||||||||||||||||
Sbjct: 133 tttctctgtatagccctagatgtcctggaac 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 851
Length adjustment: 10
Effective length of query: 440
Effective length of database: 841
Effective search space: 370040
Effective search space used: 370040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
