BAC Information

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BAC

Clone NameMSMg01-114J22
Chromosome6 (Build37)
Map Location 105,172,213 - 105,172,809
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn6, LOC384470
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114J22.T7 (MSMg01no114_j22.b1)MSMg01-114J22.TJ (MSMg01no114_j22.g1)
ACCAG326455AG326456
length1,488732
length of high quality
(start - end)
---598 (73 - 670)
definitionCHROMAT_FILE: MSMg01no114_j22.b1 PHD_FILE: MSMg01no114_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:20 2005CHROMAT_FILE: MSMg01no114_j22.g1 PHD_FILE: MSMg01no114_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATGAGCGCGTGTATATACGCAGTCGACCCATCATTCTATTGCAACGAT
ACCGGCGCCTGTTATACGTCGCGTTATGATCTGTCTGGCCCGTCGCGCGG
TGTGCGCGTACTGATTACCTCTATTACCGCGGCGTATTATTCCATACGCC
GTCCGCCGAACGGCGGCGCGTCCGTGTATACGAGGTCTAACAGTAATCTA
GCCCGTGTCTTTCGTATCGCCGCGATTCGCGACGATACGCCATACGGAAT
CATACGCGGTACGGCCATGCCGGTGTNTTCGACGTGTAACGGATATTTTA
CGCGCGTGCCGCGTTCGCACTCGCACCGGTTTACTCGACGCGTCGCGTCG
GCGCGTTTGCTGGATGTTCATATTGGCTNATATAACCATATCACTACCGT
CCACCGCGCGCGCCCGTCGTGTTTTTTATATTATAATTGTCCGCGCGGCG
ACAGTGGTGCAAACTTTACGCGGCTGTGTTGTTGCGCACGCCCGTGGCAA
CGAAGGCGCTGTTTATTGTGATTACTAATGTATATGCAGAATAATCGCCG
ACGCGCGCGAATAATGCCGCGGATATTACGCGATTTTGGCCGCGTGTGAC
TAGCTGACGTGCGTATCTGCGCTCGGCCGTATTAACGCCGGCTATATCCG
GGTGCTAGTCGATATACTGCACGCGCGCTTTGTTATCACCCACGGTCGCC
GCGATGTTATGTCTTATATATTTTCGCCCCGGTGTTGTTAGTGTACATAC
TGAGTTCTATGTATACACCCGCATGCGTGTGGTGGTTCGACGTCAATCGT
TGCGTCCGCGGTTGAATCATACAAGTATGGCGATTCATACGACACGTATA
TGACGCGTAGGTCGGTTTATTNTCTGCGAGTGTGGATTACCGGNCGCGAC
AGTTGATTATATAAACAGTACTATNACAACCCAACATTCCGGTACANATA
CGCCGTTCGGTACGTCTGCGCGCGATGCGCGCTCTAGTATGTAGTGCTGT
CTCGGCCCGCCTACTGTTCTATACACATATTCCGCTCTGATAGTGCCGCC
TCCACGCTTATATCATGCGCNTCGCGCGTACTCGGTGGTTATCGTCTCAG
GCCCGGATATANCGTCAGTATCTTACGTTTCGACTCGTCTGATATCGACT
TCGGACGCGTCGTACGTACGAGATTATGNGTGTACGTGTGTTATTCGCGC
GAGACACGCGATCATCGGTATAGGTACAGTCACCGCACGGTCAGTCCGAG
CTTCTATATATCATCTGCAATCTCGCGTCGACGCACGTCTTTCTTTATAT
AGAGATGTGTACACGACGTAGGCGCGCGCGCGCGTGTGTGTATTCGTGTA
ATAGTATCGCTCGCCGGCGACGCAGCGCGATTATACGGATAAAANGTTAT
ATAGCGATACACCTCGTTATCTATATTNTCTGATNGTCGCGCGCGACGTG
TCCGTGGCTACGATCGATTCTTAGTTAGTTCGTCTCTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTA
ATGGGGTTGTTCGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATAT
GTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAAATCCTTTCCC
AATCGAACAGCCACATTTTAAGCCTACATTCTATCTTGCCATTTATTGTG
CAACATTAGAAAAATCATGCAGTACTTAATGTAGGAATTAAATGAGCCAC
GGGGTAACCAATCAAATGAATTGATAAGCTAAGATGTCTTAGAAATTGAT
CCATAACAGTACTCACTAAGATCACCCAAAGATTCTAGAAGATTCTGCTT
CACATTGAATAAATCATTGTAGCTCAAACACCTATTTTAAGATATCTGCC
CTCTTATAGCTTCCATCTTAGGTCCCTGTTCTAAGCTGGAGGAGAATTTT
TAGATAAAGTGTTCAAAGAAGAAGCATGTTTTGGTATAGGTGACCTAGTA
ATAGGGTAGAGTTGGCTTAATGTTCTCTAAAATCAACAGAATGTGAGATG
GAGGCATCTGTATTGACTAAACACCCACGTGCATGTTGCATTACATCAAA
TAAGTCATTTGATTCCTACCAAGAAATTCTTTGGTTATTTGTTTCTTTGT
TTCTTTCTTTGGTTCTTTCTTTGCCTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_j22.g1 MSMg01no114_j22.g1 CHROMAT_FILE:
MSMg01no114_j22.g1 PHD_FILE: MSMg01no114_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:20 2005
         (598 letters)



>mm_chr6_105172013_105173010
          Length = 998

 Score = 1094 bits (566), Expect = 0.0
 Identities = 590/598 (98%), Gaps = 2/598 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttcagttctgagccccattttttaatggggttgttcgattttctgaagtccacctt 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tttgtttagttctgagccccattttttaatggggttgttcgattttctgaagtctacctt 260

                                                                       
Query: 61  cttgagttctttatatatgttggatattagtcccctatctgatttaggataggtaaaaat 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatatgttggatattagccccctatctgatttaggataggtaaaaat 320

                                                                       
Query: 121 cctttcccaatcgaacagccacattttaagcctacattctatcttgccatttattgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcccaatcgaacagccacattttaagcctacattctatcttgccatttattgtgca 380

                                                                       
Query: 181 acattagaaaaatcatgcagtacttaatgtaggaattaaatgagccacggggtaaccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattagaaaaatcatgcagtacttaatgtaggaattaaatgagccacggggtaaccaat 440

                                                                       
Query: 241 caaatgaattgataagctaagatgtcttagaaattgatccataacagtactcactaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 caaatgaattgataagctaagatgtcttagaaattgatccataacagtactcagtaagat 500

                                                                       
Query: 301 cacccaaagattctagaagattctgcttcacattgaataaatcattgtagctcaaacacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacccaaagattctagaagattctgcttcacattgaataaatcattgtagctcaaacacc 560

                                                                       
Query: 361 tattttaagatatctgccctcttatagcttccatcttaggtccctgttctaagctggagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattttaagatatctgccctcttatagcttccatcttaggtccctgttctaagctggagg 620

                                                                       
Query: 421 agaatttttagataaagtgttcaaagaagaagcatgttttggtataggtgacctagtaat 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 agaatttttagataaagtgttcaaagaagaagcatgtttgggtataggtgacctagtaat 680

                                                                       
Query: 481 agggtagagttggcttaatgttctctaaaatcaacagaatgtgagatggaggcatctgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 agggtagagttggcttaatgttctctaaaatcaacagaatgtgagatggagtcatctgta 740

                                                                     
Query: 541 ttgactaaacacc-cacgtgcatgttgcattacatcaaataagtcatttgattcctac 597
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgactaaacacctc-cgtgcatgttgcattacatcaaataagtcatttgattcctac 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)