BAC Information

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BAC

Clone NameMSMg01-114K10
Chromosome6 (Build37)
Map Location 137,532,000 - 137,532,474
singlet/doubletsinglet
Overlap geneEps8
Upstream geneAtf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg, Ptpro
Downstream geneStrap, Dera, 9830102E05Rik, Mgst1, Lmo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114K10.T7 (MSMg01no114_k10.b1)MSMg01-114K10.TJ (MSMg01no114_k10.g1)
ACCAG326479AG326480
length729723
length of high quality
(start - end)
105 (48 - 152)475 (76 - 550)
definitionCHROMAT_FILE: MSMg01no114_k10.b1 PHD_FILE: MSMg01no114_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:23 2005CHROMAT_FILE: MSMg01no114_k10.g1 PHD_FILE: MSMg01no114_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAGGAAT
TCTGCCTATACTTGACGATGCTCTTGGAGAAGACTGAAATTCTGCCAGGG
GCCAGCCCTGGCGGGATCTTCTTTCTTGTTGGTTCTTCTTGAGGCAGCAG
AGGGTACGACTTTGTCTTAGGAGGTACAGATTAATCCGAGGCCGACCATC
TCAGGAAGATCACCTGCTAGTTAATAGCTTGTCCTATTATGGTTCCTGAC
TTTGTCTTAGGAAATACAGGGGTAAGACTTTATCTTACAAGATATTTAGG
GTTTCTGTCCAGCAATAAAAAGTTTACTATTCTAAGTTACTACGCTACTG
TAGCTGACCTGCCTTCTGTGTTCCTCTGAGACCAGAGACTGCCGTCTTAC
GCACTTAGCATCTCACCCCTAAAATAGTAGGAGATTAACTCAAGGATTAA
TGGTTAGAGCCTTTTCCCTTTTGTCCTGACGTCTCTTGCATCATGAAAGT
CTGGAGCCATAAACTTCTTATTGAACCCGGAGACGAGACCCCCCTTTGCC
TACTCCCATCTGCCTAACCCTATGCCTAACTGCCCTCTATTTGATTCACA
AATGCCTCATTTATAGCTCTTCCATCTCCAACCAGGTTGGGGTTCCCCCT
TTGCCTGGCCTTCTTCACAAATTACCATACCCTACCCCTTCTCCCTACTT
CTCTCTCCCCCGGTCCCTACACCACACTC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCCAGTGTCCTGGGCCAAACTACT
GACGACCCAGGAGGTGAAGTTGAAGAAGCCATAGGAGTAGCCCTTTAGCA
ATCTCAGGTCCTGGTGTACGGAAAGAGGGTTCTTTTCTAGAAAGACTTGG
AGAATATCATACAAACACAGAGATTCTTGGGAACGCCCTGCTGAGTGACA
CACTGATCCAATAAACTTGAAGGGTCTGAAGGTCCACACGACAACTCACA
CTGGGAGGAGCACTCAGAGAAGAACACAGAACTTCTTACAAAACGTAAAA
CCCAAGGACACTGGTTCTGCTGTTTGCATTTCTATCTCCTGAGTTTATTC
TGAATGCAAATAATGTTTTATGTCTGAGATTCCAGAAGGCCATCACGTCT
GCTGCAGAAGTGATGTATGCAGAAATGCTATACATATGGGATATTTTGAT
ATCCGGCTTTTGAAGGACATTTCCAGTAAATAAAAATGGGCACAAAATGT
TCAGTTAAGACACACAAACAAACAAACAAACAAGGGCTAGAATGGAAGAA
AATATGCCCAAATCTTATTTCCTTCAGCATGTCCCTCCAAGTGGCACCCA
CCCGATTTGTGAAAAATTCCCAGCTGGACTCTCCTTATTCTATTTGAGAG
AGGCTTTGCTAGAGATTACTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_k10.g1 MSMg01no114_k10.g1 CHROMAT_FILE:
MSMg01no114_k10.g1 PHD_FILE: MSMg01no114_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:23 2005
         (475 letters)



>mm_chr6_137531800_137532674
          Length = 875

 Score =  888 bits (459), Expect = 0.0
 Identities = 471/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccagtgtcctgggccaaactactgacgacccaggaggtgaagttgaagaagccatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccagtgtcctgggccaaactactgacgacccaggaggtgaagttgaagaagccatagg 260

                                                                       
Query: 61  agtagccctttagcaatctcaggtcctggtgtacggaaagagggttcttttctagaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtagccctttagcaatctcaggtcctggtgtacggaaagagggttcttttctagaaaga 320

                                                                       
Query: 121 cttggagaatatcatacaaacacagagattcttgggaacgccctgctgagtgacacactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggagaatatcatacaaacacagagattcttgggaacgccctgctgagtgacacactg 380

                                                                       
Query: 181 atccaataaacttgaagggtctgaaggtccacacgacaactcacactgggaggagcactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccaataaacttgaagggtctgaaggtccacacgacaactcacactgggaggagcactc 440

                                                                       
Query: 241 agagaagaacacagaacttcttacaaaacgtaaaacccaaggacactggttctgctgttt 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 agagaagaacacagaacttcttacaaaacgtaaagcccaaggacactggttctgctgttt 500

                                                                       
Query: 301 gcatttctatctcctgagtttattctgaatgcaaataatgttttatgtctgagattccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatttctatctcctgagtttattctgaatgcaaataatgttttatgtctgagattccag 560

                                                                       
Query: 361 aaggccatcacgtctgctgcagaagtgatgtatgcagaaatgctatacatatgggatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggccatcacgtctgctgcagaagtgatgtatgcagaaatgctatacatatgggatatt 620

                                                                  
Query: 421 ttgatatccggcttttgaaggacatttccagtaaataaaaatgggcacaaaatgt 475
           |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 621 ttgatatcaggcttttgaaggaaatttcaagtaaataaaaatgggcacaaaatgt 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)