BAC Information

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BAC

Clone NameMSMg01-114K11
Chromosome6 (Build37)
Map Location 140,306,514 - 140,307,029
singlet/doubletsinglet
Overlap geneLOC100039020
Upstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3, LOC100042680
Downstream geneLOC269810, Plekha5, Aebp2, EG664868, LOC664875, Pde3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114K11.T7 (MSMg01no114_k11.b1)MSMg01-114K11.TJ (MSMg01no114_k11.g1)
ACCAG326481AG326482
length707710
length of high quality
(start - end)
315 (43 - 357)516 (77 - 592)
definitionCHROMAT_FILE: MSMg01no114_k11.b1 PHD_FILE: MSMg01no114_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:23 2005CHROMAT_FILE: MSMg01no114_k11.g1 PHD_FILE: MSMg01no114_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATGGGCA
AGCAACAAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCACGC
TGCGGGTTATAAAAGCAGCGCCATTTTCCCAGTTCGGGATCTTCCTGAGA
AGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGTCTTT
CTTGCCGGTCGAGCGGGACGCAATATATAAGGACAACTGCATGTTGATAC
GGGCAGAGTCCAGAGAGTGGCAAATCTAAGGGGGCTGCCCAGGCTGCCCT
GGTGACTAGCACTTACCGCTAGGAGGAGGAAGCCAGGGAAGGAAGGGAAG
TGGACCAACAAGCTTGCAGGAGGTTCGGTTCATCATCACCCACATCGCTG
TACATACCGGTGATATATGCACACACAGTAAGCTGCAGACCACATAAGTC
ACAGAACTTTCTCCTAGAAACAGGAAAATAAACAGCTGATCTCTGACCTT
TGAGAAATAGGAGGACCAACTTGGGATGCGACCGGCCATGGAAGGCTGGC
TCATTATAATGTGCGAAAGCTGAGCAAAACCCATTTCACTCAAGAACAAG
AGACTCCCAGGCACAGCAGCCAATCCTGACACTGGAACACCCAGGCCAAG
GCCCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAAGTAATCCTACCCAGTAGC
AATGAGAACCTGTCAAAGCTTGGGCTTCTAAATGGAGTTTCCAGTAACAT
GAGCCAAGCTCTTGGAGCAATGGCCCACTGCAGACAGAATTTAGAAGGAT
TAGATGAACCTGGAACATCTTATTGAGTCAGAGAGTCAGGAAGTGATTCA
TAAACAACTCAGTCATCAAAGGAATACAGAAGCCAGCTTGTGAAGGTAAT
ATGTGGCCAAATATGGGTATATGCTCAGAAGTAAAAAGTATTAAATATAG
GCACACTGAAGGAAATAAGGCATGAGTTCATATTACGATAGAAAGCATAT
GAAACAGAGTGAAAGGTTAAAAGGAAGAGAGAAGAAAGCAGAGGTGGGGG
AGGGGCAGAGGAAAGCTTTCATAGGGTGGATATCATAACTTGAACAACCA
TCATCGCCAAGAGATCCTAGTGAAAACATGATAATTAATTAGAAATCTAT
GTAGTTCTCCCTATACTAGAGTACCTTCCCAGAAAAAATAGTTGCAAATC
AAAGGATAAACTGTAACAATTTTGTAATAGTGTACATACTTACTAGGTAC
TGTTCTTGTAACTATGTCAAAGCTCCTTTGGTCACGTTTGTAGCTGTTGC
TCTATAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_k11.g1 MSMg01no114_k11.g1 CHROMAT_FILE:
MSMg01no114_k11.g1 PHD_FILE: MSMg01no114_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:23 2005
         (516 letters)



>mm_chr6_140306314_140307229
          Length = 916

 Score =  998 bits (516), Expect = 0.0
 Identities = 516/516 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaagtaatcctacccagtagcaatgagaacctgtcaaagcttgggcttctaaatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaagtaatcctacccagtagcaatgagaacctgtcaaagcttgggcttctaaatgga 260

                                                                       
Query: 61  gtttccagtaacatgagccaagctcttggagcaatggcccactgcagacagaatttagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttccagtaacatgagccaagctcttggagcaatggcccactgcagacagaatttagaa 320

                                                                       
Query: 121 ggattagatgaacctggaacatcttattgagtcagagagtcaggaagtgattcataaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggattagatgaacctggaacatcttattgagtcagagagtcaggaagtgattcataaaca 380

                                                                       
Query: 181 actcagtcatcaaaggaatacagaagccagcttgtgaaggtaatatgtggccaaatatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcagtcatcaaaggaatacagaagccagcttgtgaaggtaatatgtggccaaatatgg 440

                                                                       
Query: 241 gtatatgctcagaagtaaaaagtattaaatataggcacactgaaggaaataaggcatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatatgctcagaagtaaaaagtattaaatataggcacactgaaggaaataaggcatgag 500

                                                                       
Query: 301 ttcatattacgatagaaagcatatgaaacagagtgaaaggttaaaaggaagagagaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcatattacgatagaaagcatatgaaacagagtgaaaggttaaaaggaagagagaagaa 560

                                                                       
Query: 361 agcagaggtgggggaggggcagaggaaagctttcatagggtggatatcataacttgaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcagaggtgggggaggggcagaggaaagctttcatagggtggatatcataacttgaaca 620

                                                                       
Query: 421 accatcatcgccaagagatcctagtgaaaacatgataattaattagaaatctatgtagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accatcatcgccaagagatcctagtgaaaacatgataattaattagaaatctatgtagtt 680

                                               
Query: 481 ctccctatactagagtaccttcccagaaaaaatagt 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctccctatactagagtaccttcccagaaaaaatagt 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)