BAC Information

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BAC

Clone NameMSMg01-116B07
Chromosome6 (Build37)
Map Location 110,102,127 - 110,102,362
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116B07.T7 (MSMg01no116_b07.b1)MSMg01-116B07.TJ (MSMg01no116_b07.g1)
ACCAG327550AG327551
length713704
length of high quality
(start - end)
---236 (84 - 319)
definitionCHROMAT_FILE: MSMg01no116_b07.b1 PHD_FILE: MSMg01no116_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:13 2005CHROMAT_FILE: MSMg01no116_b07.g1 PHD_FILE: MSMg01no116_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACANNCACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTCCGATGCACCCTAATATGAGATCTTCCTGGA
GGGTAATCAGCTCACTACACAGTTTTAGTGATGCTTCTGTCCTGACTGAC
TTCTCTGAGGCCATCTCAGACCGTGTTGCTCAAGATCACATATGACGCGT
GCCCGACGTATAGGAAGGTCTCGTCGTCGCTGCCTGGCTTCTATGACGCT
CGCGCATACAGGCCTTGTGAGTATAGCATTTGACCCAGTCTCTACATTTG
TAAAGGTTCACTCCTGAATGAATTCATACAAAGTAGACAACGATGTAATG
TTACGTTTAAAGCGTATTGTCACACTCGACATGAATCTGGACGGTCCTCT
CACCTAGATGAATTCTCTGAAGAACTCTGAAACAGCCTTTGACAGCTGAG
CATTTGACGCCTCCACTACTGTTGTTTGGACTCCCTCCCGATGGAATGCT
ACTATGATAACTGCAAGTTTCAGCCTGTTAAAAGCACTTACCCCATTGAC
GACACCTGAAACGAATGCCTCCTGAATGATATCTACCATGATGACTATTA
TGGAATGATGTGATTTAGCACTAGTGACTCTCACTGATATTGCAGTGATA
TACTCCTGCCTGAATTCGACGATGATCTCTCAGACTGCCTCTGACGATAA
AGCATCTGTGACT
TTCTTTNTTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGCACCAAGCACTA
TGAAAATTGTTAAGCCCTTACTCAGCAGTTCTAGATCAGTAAGGAGATGG
TTTCAGGACAACTACAAATTTATAGCTAACATGTTGTTCAATGTATCACC
ATGGTAAAGTTGTCAGTGGCTAATGACTGGGCAGGGAAACAGAGGCGGGA
TTTTAGATTTCCTGGGCAAGGGATCATGGCAAAAAGAAGGTTATAGAATT
GCCATGCCAGAAAAAGAATACAATGCAAGATTGAAAGCTGTGAAGACAGA
GAACCAGCCATGTAAGAATTAGTCATCACGGCGCTTTACAGCAGATTAAG
AAATTACCAATTTCACAACACTGATCAGGTAATCTATCAGGGATCATCCC
TGAAGAAACTGATTCTCCCTCTCTCACCAGTCACTGAGTACACATTGTCA
TGGCGTCCATGACCATGGACATGACACCTTGAGGAATATTTACCCAAAGA
AACAGCCAGATGGGCCCGGTCTACTCAAAAATTCCACAGTGAACACGCCC
ATGGAAGATTGCCCATGCCCCATCACTTATTGTCTCGTTTATCAATCCCC
TAGCTTTTCCGTTTATAACAATCAAATTGTTAACTCATTGGTCGTTCCCT
TGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_b07.g1 MSMg01no116_b07.g1 CHROMAT_FILE:
MSMg01no116_b07.g1 PHD_FILE: MSMg01no116_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:13 2005
         (236 letters)



>mm_chr6_110102042_110102677
          Length = 636

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagcaccaagcactatgaaaattgttaagcccttactcagcagttctagatcagtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagcaccaagcactatgaaaattgttaagcccttactcagcagttctagatcagtaag 262

                                                                       
Query: 61  gagatggtttcaggacaactacaaatttatagctaacatgttgttcaatgtatcaccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagatggtttcaggacaactacaaatttatagctaacatgttgttcaatgtatcaccatg 202

                                                                       
Query: 121 gtaaagttgtcagtggctaatgactgggcagggaaacagaggcgggattttagatttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaaagttgtcagtggctaatgactgggcagggaaacagaggcgggattttagatttcct 142

                                                                   
Query: 181 gggcaagggatcatggcaaaaagaaggttatagaattgccatgccagaaaaagaat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gggcaagggatcatggcaaaaagaaggttatagaattgccatgccagaaaaagaat 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)