BAC Information

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BAC

Clone NameMSMg01-116O20
Chromosome6 (Build37)
Map Location 69,490,818 - 69,491,475
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2
Downstream geneGm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116O20.T7 (MSMg01no116_o20.b1)MSMg01-116O20.TJ (MSMg01no116_o20.g1)
ACCAG328188AG328189
length701700
length of high quality
(start - end)		650 (52 - 701)443 (73 - 515)
definitionCHROMAT_FILE: MSMg01no116_o20.b1 PHD_FILE: MSMg01no116_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:19 2005CHROMAT_FILE: MSMg01no116_o20.g1 PHD_FILE: MSMg01no116_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCCCGGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTACCCTTCCAGGGCTTTCATTCTTCCCCCACTATTCCA
TAAGAGTCTCCAACCTCAGTCCAATATTTGGCTGTGGGTTGGGTAGAACC
TCTCAGAGAACAGTTATCCTAGGCCCTACCTGCAAGCATAACAGAGTATC
ATTAATAGTGTCAGGGATTGGCATTTACCAATGAGATAGATTTCAAGTTG
GGCCAGTTATTGGTTATTCATTCCCTTGAGTCTCTGTTCCATCTTTGTTC
CAGGATTTTTTTTAAACAGGAACAATTTTGGGATGAGAGATTTGTGAGTG
GGTTTGTGTCTTTATGCCCCTACTGTGGGTTCTGCTTGTCTACAGGAATG
AGCCTATTCTGTGCATTCCTAGAATTTCAATTATAACTTTCTGTACCAAA
AAGCTAATTACTGGCAGAATTTTGCTATTTCATATTTATGGCCTTTCACT
AGGTTCATATCCTCAAAGTCTTAGATAACCAAAGATATGTATCATATGTT
GTGATGCAGCTGATTGTTTATAGTAAATATTTTATGACCAAGAGCTGGGG
AAGGAAGCAGGGGTCAGAACTTCCAGGCTGACAGACTGATCTAGAAAGAA
GATAGCAGAAGTAAGAAAATTGAGAGCAGACATGGAGGGGAACAGACATG
A

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAACACATTTATCATGAT
GAGGTGTTAGATTTTGTTGAATGCTTTCTCACTATCAAATGAGATGATCA
TGTGGTTTTTGTCTTTGAGTTTGTTTACATAGTGGATTACAGTTATGGAT
TTCCATATATTGAACCATCCTCGCATCCCTGAGATGAAGCCTACATGATC
ATGATGGATCACATTCCACATTGTTTGGATGTGTTCTTGAATTCAGTTTG
TGAGAATTTTATTGAGTATTTTTGCATCAATATTCATAAGGGAAATTGGT
CTGAAGTTCTCTTTCTTTGTTGGGTCTTTGTGTGGTTTAGGTATCAGAGT
AATCATGCTTCATAGAATGAAATGGGTAGAGTACCTTCTATTTCTATTTT
GTGAAAAAGTTTGAGGAGAATTGGAATTACGTCTTCTTTGAAGGTCTGAT
AAAACTCTGCACTAAACCCATCTGGTCCTGGGATTTTTTTGCTTGGAAGA
TTATTAATGACCTGCTTTTCTTTCTTTCAGGGATATGGGGCTGTTTACGT
CCTTAAGCTTATATTGATTTAACTTGGGTAACTCGTATCTGTCTAGGAAG
TTGTCCATTTCCTCCGGTTTTCCAGTTATGTTGAGGATAGCTTTTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_o20.b1 MSMg01no116_o20.b1 CHROMAT_FILE:
MSMg01no116_o20.b1 PHD_FILE: MSMg01no116_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:19 2005
         (650 letters)



>mm_chr6_69490626_69491675
          Length = 1050

 Score = 1054 bits (545), Expect = 0.0
 Identities = 626/659 (94%), Gaps = 13/659 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctacccttccagggctttca-ttcttccccca-ctattccataagagtctcca 61
           ||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||| |||
Sbjct: 193 ggaattcctaccctttcagggctttcaattcttcccccaactattccataatagtcgcca 252

                                                                       
Query: 62  acctcagtccaatatttggctgtgggttgggtagaacctctcagagaacagttatcctag 121
           ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 253 acctcagtccaatatttggctgtgggttgggtagaacctctca-aggacagttatcctag 311

                                                                       
Query: 122 gccctacctgcaagcataacagagtatcattaatagtgtcagggattggcatttaccaat 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 312 gccctacctgcaagcataacagagtatcattaatagtgtcagggattggcatttaccagt 371

                                                                       
Query: 182 gagatagatttcaagttgggccagttattggttattcattcccttgagtctctgttccat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gagatagatttcaagttgggccagttattggttattcattcccttgagtctctgttccat 431

                                                                       
Query: 242 ctttgttccaggattttttttaaacaggaacaattttgggatgagagatttgtgagtggg 301
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctttgttccaggattgtttttaaacaggaacaattttgggatgagagatttgtgagtggg 491

                                                                       
Query: 302 tttgtgtctttatgcccctactgtgggttctgcttgtctacaggaatgagcctattctgt 361
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 492 ttagtgtctttatgcccctactgtgggtcctgcttgtctacaggaatgagcctattctgt 551

                                                                       
Query: 362 gcattcctagaatttcaattataactttctgtaccaaaaagctaattactggcagaattt 421
           |||||||||||||||||||| ||||||||||||||||  ||||||||||||||| |||||
Sbjct: 552 gcattcctagaatttcaattgtaactttctgtaccaactagctaattactggcaaaattt 611

                                                                       
Query: 422 tgctatttcatatttatggcctttcactaggttcatat----------cctcaaagtctt 471
           ||||||||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 612 tgctatttcatatttatggcctttcactaggttcatatgtgtaacaatcctcaaagtctt 671

                                                                       
Query: 472 agataaccaaagatatgtatcatatgttgtgatgcagctgattgtttatagtaaatattt 531
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
Sbjct: 672 agataaccaaagagatgtatcagatgttgtgatgcagctgattgtttatagtaaagatct 731

                                                                       
Query: 532 tatgaccaagagctggggaaggaagcaggggtcagaacttccaggctgacagactgatct 591
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tatgaccaagagctggggaaagaagcaggggtcagaacttccaggctgacagactgatct 791

                                                                      
Query: 592 agaaagaagatagcagaagtaagaaaattgagagcagacatggaggggaacagacatga 650
           |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 792 agaaagaagaaagcagaagtaagaaaattgatagtagacatggaggggaacagacatga 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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