BAC Information

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BAC

Clone NameMSMg01-117O08
Chromosome6 (Build37)
Map Location 69,292,660 - 69,293,192
singlet/doubletsinglet
Overlap geneIgk, Igkv4-65
Upstream geneIgkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66
Downstream geneIgkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117O08.T7 (MSMg01no117_o08.b1)MSMg01-117O08.TJ (MSMg01no117_o08.g1)
ACCAG328908AG328909
length723723
length of high quality
(start - end)		536 (67 - 602)322 (75 - 396)
definitionCHROMAT_FILE: MSMg01no117_o08.b1 PHD_FILE: MSMg01no117_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:35 2005CHROMAT_FILE: MSMg01no117_o08.g1 PHD_FILE: MSMg01no117_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:35 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAAGCCGCGGA
ATTCCACACCCTTTCTCCTCTTACCCCATAAAAACCCCTAGCTTTCGAGC
CTTGTGGCGGACATCCATTATCTCTCCACTGGGATGCATGTCAGTTGGGA
GCTCATGTAATTACATCAAGATCATCCTTCGTGATTTTTTGGGTGCAAAC
CGAACTGGGAATTGAGTGGGGGTTTCCCCACTAGGTTCTATCAAGACCAG
GATCAAAAACACAATGAATTTTCATGTGCAGATTTTCAGCTTCATGCTTA
TCAGTGTCACAGGTAGAGATGGATAGGAGTTTGAGTTCAGAAAACAAGGT
TCTTTTTCCCAGGAAAGTTTCATAAAGTAGACCTTTTTCTTTCCTCTGAA
TATTGAATGGTATGGAATTATTTTTGTATCTCTGTCTACTAACACCCTCT
ATTTCACTCTCTTTCTCTTCAGTTGTTTTTTCCATAGTCATAGGGTCCAG
TGGAGAAATTGTGCTCATTCACTCTTCAACAATCATGGCTGCATCTCCAG
GGGAGAAGGTCACTATCACCTGCAGTGTCAGCTCTAGTGTAAGTTCCAGC
TACTATCACTGGTACCAGCAGAAGTCAGGAGCCTCCCCCAAACTCTGGAT
TTATGGCTCATTCAATCTGGCTTCTGAAGTTCTAGCTCACTTCAGTGGTA
GTGGGTCTGGGAACTCTTGCTCT

NCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTCGCAATTTGGTTGTGAAGAGC
ATCTGTAACAGCTGTTGACAATCATCCCAAGTAGGTTGATGAGAGAACAT
AAGGAACTCCACCAACCCTGTGAGGTGTTGGGGATCCTGAGAAAGGGGGT
GGTTAGTTTTCCAGTTATAAAGATCAGCAGAGGAAAGTGACCAGTACTAA
AGGGTTTGAATTTTGGGCGTTCCAGAGTCTGCCTGGACTCTGCATTCTGC
AGCTCCATGTACTGACAGCAGTCCTCCTCCTGCTGCCCTGAGGGGTTCAG
GGTTCCCCATTGTTGGGGGGGTTGAGGTTGTGGATAAGGTGAAGGTCNCC
TCCTTTCTTTGTTCTTTATACAATTCTATATTTTTATCTCTATTACATTT
TCTTCTTTTTATCCACTAATACCAACTCATACAACTCCTATTTATTCACT
CTCTCCCTATCAACTACTATCTTCACTTCTTTGTACTCACAATTTTTTTT
CATTCCTCTTATCTACTTCACATTTTTTCATTTCTTTTTTATCTGCTTTT
TTTCCTTTCTCCTTTTTTTATCTCTTTTATTTCATAACACCGTTCCTACT
TTTTTAATTTATATTCCACACACTCATATTCTCTTTTTTATTTCTTTATT
TTCATTTCTTTATCTTACACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_o08.b1 MSMg01no117_o08.b1 CHROMAT_FILE:
MSMg01no117_o08.b1 PHD_FILE: MSMg01no117_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:35 2005
         (536 letters)



>mm_chr6_69292283_69293218
          Length = 936

 Score =  984 bits (509), Expect = 0.0
 Identities = 527/533 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   cttaccccataaaaacccctagctttcgagccttgtggcggacatccattatctctccac 63
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 910 cttaccccataaaaacccctagctttcaagccttgtggcggacatccattatctctccac 851

                                                                       
Query: 64  tgggatgcatgtcagttgggagctcatgtaattacatcaagatcatccttcgtgattttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tgggatgcatgtcagttgggagctcatgtaattacatcaagatcatccttcgtgattttt 791

                                                                       
Query: 124 tgggtgcaaaccgaactgggaattgagtgggggtttccccactaggttctatcaagacca 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgggtgcaagccgaactgggaattgagtgggggtttccccactaggttctatcaagacca 731

                                                                       
Query: 184 ggatcaaaaacacaatgaattttcatgtgcagattttcagcttcatgcttatcagtgtca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ggatcaaaaacacaatgaattttcatgtgcagattttcagcttcatgcttatcagtgtca 671

                                                                       
Query: 244 caggtagagatggataggagtttgagttcagaaaacaaggttctttttcccaggaaagtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 caggtagagatggataggagtttgagttcagaaaacaaggttctttttcccaggaaagtt 611

                                                                       
Query: 304 tcataaagtagacctttttctttcctctgaatattgaatggtatggaattatttttgtat 363
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 610 tcataaagtagacctttttctttcctctgaatattgaatggtatgaaattatttttgtat 551

                                                                       
Query: 364 ctctgtctactaacaccctctatttcactctctttctcttcagttgttttttccatagtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctctgtctactaacaccctctatttcactctctttctcttcagttgttttttccatagtc 491

                                                                       
Query: 424 atagggtccagtggagaaattgtgctcattcactcttcaacaatcatggctgcatctcca 483
           |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 490 atagggtccagtggagaaattgggctcattcagtcttcaacaatcatggctgcatctcca 431

                                                                
Query: 484 ggggagaaggtcactatcacctgcagtgtcagctctagtgtaagttccagcta 536
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 430 ggggagaaggtcactatcacctgcagtgtcagctcaagtgtaagttccagcta 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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