Query= MSMg01no117_p02.b1 MSMg01no117_p02.b1 CHROMAT_FILE:
MSMg01no117_p02.b1 PHD_FILE: MSMg01no117_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:38 2005
(578 letters)
>mm_chr6_114186152_114187128
Length = 977
Score = 1035 bits (535), Expect = 0.0
Identities = 565/575 (98%), Gaps = 3/575 (0%)
Strand = Plus / Plus
Query: 5 gaattcagattctcacccttggcagacagttccttcactgctgagccatctcgtgaggcc 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagattctcagacttggcagacagttccttcactgctgagccatctcgtgaggcc 264
Query: 65 ccaatttagtctttaagatgatgccctaagtcctttcattctgataaatgatattcaacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaatttagtctttaagatgatgccctaagtcctttcattctgataaatgatattcaacc 324
Query: 125 acaggctcctggaaaagcagaaacgaatgcctaaagagaatgggctgtggctaataaaat 184
| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 325 agaggctcctggaaaagcagaaacaaat-cctaaagagaatgggctgtggctaataaaat 383
Query: 185 gattataatttaatgatgacaatgtaaccaagggtccctgtgttcccatccctactgagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gattataatttaatgatgacaatgtaaccaagggtccctgtgttcccatccctactgagc 443
Query: 245 catggagcacatgggacacgggaaaacccatttccttcctctggctctgtcacggggtct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catggagcacatgggacacgggaaaacccatttccttcctctggctctgtcacggggtct 503
Query: 305 ccatgaccttttcctgtcatcctcttggtaccacagcacgttctcccactagctctatgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccatgaccttttcctgtcatcctcttggtaccacagcacgttctcccactagctctatgc 563
Query: 365 tcactagtccctatggacctctgtccgtccatccctccctcactccacagctgtggttca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcactagtccctatggacctctgtccgtccatccctccctcactccacagctgtggttca 623
Query: 425 cagagcaggtacatgctcagctctaggagtgaactgcatgctcctatcccctcctgcctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagagcaggtacatgctcagctctaggagtgaactgcatgctcctatcccctcctgcctc 683
Query: 485 tactctagcttcccttccccttctgcatctctccatgcccactctcatcctccccacgg- 543
|||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tactctagtttcccctccctttctgcatctctccatgcccactctcatcctccccacggc 743
Query: 544 tcccccagcttatagcctgtagcctctctttgcca 578
||||| |||||||||||||||||||||||||||||
Sbjct: 744 tcccc-agcttatagcctgtagcctctctttgcca 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space: 549256
Effective search space used: 549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_p02.g1 MSMg01no117_p02.g1 CHROMAT_FILE:
MSMg01no117_p02.g1 PHD_FILE: MSMg01no117_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:39 2005
(522 letters)
>mm_chr6_114345601_114346522
Length = 922
Score = 994 bits (514), Expect = 0.0
Identities = 520/522 (99%)
Strand = Plus / Minus
Query: 1 tgctggagaaggtttcacttcctaaggcctattatggtcttgttctacccatggggtttt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 722 tgcttgagaaggtttcacttcctaaggcctattatggtcttgttctacccatgggatttt 663
Query: 61 tagaaaaatcagcattttagaaacagtgtatcaggcattatttgaagcttctgttgtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tagaaaaatcagcattttagaaacagtgtatcaggcattatttgaagcttctgttgtttt 603
Query: 121 ttgggttttgtgttttgtttattttgttgtcattttgtgactgacagagcatagggtaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttgggttttgtgttttgtttattttgttgtcattttgtgactgacagagcatagggtaac 543
Query: 181 ctgggccatgtctagctgaagtcagccaactaccaagaggtaggtagcaagtgaaaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctgggccatgtctagctgaagtcagccaactaccaagaggtaggtagcaagtgaaaaaac 483
Query: 241 aaggctagtcctcttgtcctcctgtcctcctgtccttccatccagtggaggctcttccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaggctagtcctcttgtcctcctgtcctcctgtccttccatccagtggaggctcttccct 423
Query: 301 gagaggagtcaacttgcctgcttctcagagcagctcaaagggaggctctgtcttcatctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagaggagtcaacttgcctgcttctcagagcagctcaaagggaggctctgtcttcatctg 363
Query: 361 gtttgcaaatgagaaaactgagtgttcttgattggccaagcctgagtcacatgctgatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtttgcaaatgagaaaactgagtgttcttgattggccaagcctgagtcacatgctgatgg 303
Query: 421 ctggtctagtcaactgctcttcagacacttaagattaaaagagggcaagagatggctccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctggtctagtcaactgctcttcagacacttaagattaaaagagggcaagagatggctccc 243
Query: 481 cagattcaggtgtgatgagcagaatgtggcattggatctggg 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cagattcaggtgtgatgagcagaatgtggcattggatctggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
