BAC Information

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BAC

Clone NameMSMg01-118G09
Chromosome6 (Build37)
Map Location 19,507,890 - 19,508,499
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118G09.T7 (MSMg01no118_g09.b1)MSMg01-118G09.TJ (MSMg01no118_g09.g1)
ACCAG329282AG329283
length704706
length of high quality
(start - end)
663 (42 - 704)609 (75 - 683)
definitionCHROMAT_FILE: MSMg01no118_g09.b1 PHD_FILE: MSMg01no118_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:14 2005CHROMAT_FILE: MSMg01no118_g09.g1 PHD_FILE: MSMg01no118_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACATAGTGACAATGGCTACCTTACCAAAAGCAATCTACAGAATCAATGC
AATTCCTATTAAAATTCCAAAACAATTTTTATAGATCTTAAAAGAGGAAT
TTTCAATTTTACATGGAAGAACAAAAAAAATCAGGATAGCTAAAACAATC
CTAAACAATAACAGAACTGCTAGAGGCATAAACACCTTCATCTCAAGCTA
TACTATAGACCCATAGTGATAAAAATTCATGGTATAGGTATAGAAACAGA
AAGTATGATCACTGGCATTAGATTGAAGACTGAGAAATAAACCCACAGCC
CTTTAGACATTTGATTTTTGAAAAAGAAGCCAAAGTATACAATGGAAAAA
AGAAAGCATCTTCAACAGATGGCCATGGTCTAACTGGACATCTGCATGTA
GAAGTATGTAAGTAGATACATATTTATCACCCTACACCAAACTCAAGTCC
AAGTGGATTAAAGATCTGAACATAAAACCAATATATTAAGTCTCATAGAA
GAGAAAGTGGGTACTAGCCTGGAATGCCTTGGTGCAGGAGATAATTTGGT
AAATAAGATAGAGCTCGGGCTCTAAGATCAACAATTAATCAATAGGACCT
CATGGAACTGACAAGCTTCTGTAAGACAAAGGACACTGTCCATAGGACAA
AAAG
CCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTGACTTTCAAAGTTCTTATTTTA
CTGAACCTGACTTTTTGTACTTTTCTTCTCATTAATTATTGTGACACTAT
TATAATCACTTCTTCTTGCTCAGCTTCATTGTATCCTGAAACTAATCATG
AACTCATTCCATAGCTTGTGGTTGCCATGAATAAATGGCTCTCAGAAGTT
GGATTTTTAGTGGTTGAGAATTTTTCAAGGAGGTCTGAAATGAATTATGG
CCATACAGAGGTTGTGTTTGCTAAATGTGCCTCTTTTTGATTGACTTTGG
AGTGAATGAAATAAAGGTTTGAAAACTTTCTGCTTTCAAGTGCAAGTGGT
GATGGTGATTTTCAGGCTATACTATGTATCCTCTGTCATGGGAATCATCT
TAAGAAATAAAACCCAGTGGTGCTCAGTAGTTCAGAATCAGGTCTGCATT
TCCAGAGGATGACTGCTCAGTTCCTAGTTTCTGTATTGGGTAGTTTACAA
CTGCCTAGGGGTCAGCTTCCGGGACCCACTGCCTTGGCTTCTGTAGTTAC
ACACCCATATCAGATACACCAGCATGCACACGATTAAGTATAAAATAATT
AAAATAGATAAACAAAGCACAGACATGCTGAATTTAAGCCAGATTGTTTG
ATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_g09.g1 MSMg01no118_g09.g1 CHROMAT_FILE:
MSMg01no118_g09.g1 PHD_FILE: MSMg01no118_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:14 2005
         (609 letters)



>mm_chr6_19507690_19508699
          Length = 1010

 Score = 1125 bits (582), Expect = 0.0
 Identities = 603/610 (98%), Gaps = 1/610 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgactttcaaagttcttattttactgaacctgactttttgtacttttcttctcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ttttgactttcaaagttcttattttactgaacctgactttttgtacttttcttctcatta 751

                                                                       
Query: 61  attattgtgacactattataatcacttcttcttgctcagcttcattgtatcctgaaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 attattgtgacactattataatcacttcttcttgctcagcttcattgtatcctgaaacta 691

                                                                       
Query: 121 atcatgaactcattccatagcttgtggttgccatgaataaatggctctcagaagttggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 atcatgaactcattccatagcttgtggttgccatgaataaatggctctcagaagttggat 631

                                                                       
Query: 181 ttttagtggttgagaatttttcaaggaggtctgaaatgaattatggccatacagaggttg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 630 ttttagtggttgagaatttttcaaggaggcctgaaatgaattatggccatatagaggttg 571

                                                                       
Query: 241 tgtttgctaaatgtgcctctttttgattgactttggagtgaatgaaataaaggtttgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 570 tgtttgctaaatgtgcctctttttgattgactttggagtgaatgaaagaaaggtttgaaa 511

                                                                       
Query: 301 actttctgctttcaagtgcaagtggtgatggtga-ttttcaggctatactatgtatcctc 359
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 510 actttctgctttcaagtgcaagtggtgatggtgatttttcaggctatactatgtatcctc 451

                                                                       
Query: 360 tgtcatgggaatcatcttaagaaataaaacccagtggtgctcagtagttcagaatcaggt 419
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 450 tgtcatgggaatcatcttaagaaataaaacccaggggagctcagtagttcagaatcaggt 391

                                                                       
Query: 420 ctgcatttccagaggatgactgctcagttcctagtttctgtattgggtagtttacaactg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctgcatttccagaggatgactgctcagttcctagtttctgtattgggtagtttacaactg 331

                                                                       
Query: 480 cctaggggtcagcttccgggacccactgccttggcttctgtagttacacacccatatcag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cctaggggtcagcttccgggacccactgccttggcttctgtagttacacacccatatcag 271

                                                                       
Query: 540 atacaccagcatgcacacgattaagtataaaataattaaaatagataaacaaagcacaga 599
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atacaccagcatgcgcacgattaagtataaaataattaaaatagataaacaaagcacaga 211

                     
Query: 600 catgctgaat 609
           ||||||||||
Sbjct: 210 catgctgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space:   599000
Effective search space used:   599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)