Query= MSMg01no118_j19.b1 MSMg01no118_j19.b1 CHROMAT_FILE:
MSMg01no118_j19.b1 PHD_FILE: MSMg01no118_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:31 2005
(315 letters)
>mm_chr6_45228298_45229012
Length = 715
Score = 482 bits (249), Expect = e-140
Identities = 285/297 (95%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 20 taaatgaaatgttgccattaatggtgcctatagcaaagggcgtgttatttcatattcgcc 79
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct: 220 taaatggaatgttgccattaatggtgcctatagcaaagggcatgttatttcatatt-gtc 278
Query: 80 -tcttctcataaacatcaagcgagtctgatccaaaggaataattttaaagggggatgatt 138
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct: 279 atcttctcataaacatcaagcaagtctgatccaaaggaataagtttaaagggggatggtt 338
Query: 139 gattgatgataaatagatgatagattgataaatatattataggcgatagatacataatac 198
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 339 gattgatgataaatagatgatagattgataaatatattataggtgatagatacataatac 398
Query: 199 ataaataatagatatatgcatataaataatatttagatgatatgtgatatataggtgatg 258
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 399 ataaataatagatatatgcatataaataatatttagatgatatgtgatgtataggtgatg 458
Query: 259 cacacatatacacatgtatacagttataataataagtaacataaatgatagatacat 315
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 459 cacacatatacacatgcatacagttataataataaataacataaatgatagatacat 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_j19.g1 MSMg01no118_j19.g1 CHROMAT_FILE:
MSMg01no118_j19.g1 PHD_FILE: MSMg01no118_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:31 2005
(444 letters)
>mm_chr6_45391423_45392266
Length = 844
Score = 787 bits (407), Expect = 0.0
Identities = 440/463 (95%), Gaps = 19/463 (4%)
Strand = Plus / Minus
Query: 1 ttttaggagaggctttcctgtgggtggtatgagaaagacatcacttagaaaatgtctaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttttaggagaggctttcctgtgggtggtatgagaaagacatcacttagaaaatgtctaca 508
Query: 61 ttgtccaaaatcagaaggatctcttgagaattgaggaaagattt---------------- 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttgtccaaaatcagaaggatctcttgagaattgaggaaagatttaaggggaaaaaaataa 448
Query: 105 ---taagtcacagttaaagtgggaacaggtcctaaaaagtttcttttacacaggatcttc 161
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctgtaagtcacagttaaagtgggaacaggtcctaaaaagtttcttttacacaggatcttc 388
Query: 162 tcgacagccatggtgtagtaaggtacaaatgcagagataccattataggcctgtaatatt 221
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 387 ttgacagccatggtgtagtaaggtacaaaagcagagataccattataggcctgtaatatt 328
Query: 222 ctagatgaaaacagaggcaaatattgtccaccccctaccgagctggggtccagtggcttc 281
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 327 ctagatgaaaacagaggcaaatattgtccatcccctaccgagctggggtccagtggcttc 268
Query: 282 ccacagccagatactcacccagggccatgtggaaagtgtgcagcagccctcccatgtctg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccacagccagatactcacccagggccatgtggaaagtgtgcagcagccctcccatgtctg 208
Query: 342 ccagcccagagcactggaactctggcgggtcacgggttttctcccactccctttatttcc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ccagcccagagcactggaactctggcgggtcacgggttttctcccactccctttatttcc 148
Query: 402 aggtacccactgcccaacactagaatatatagcaatgtttgca 444
||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 147 aggcacccactgcccaacactagaatatatagcaatgtttgca 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
