BAC Information

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BAC

Clone NameMSMg01-119A03
Chromosome6 (Build37)
Map Location 68,880,661 - 68,881,028
singlet/doubletsinglet
Overlap geneIgk, Igkv13-85
Upstream geneEG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459
Downstream geneIgkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119A03.T7 (MSMg01no119_a03.b1)MSMg01-119A03.TJ (MSMg01no119_a03.g1)
ACCAG329735AG329736
length708709
length of high quality
(start - end)		497 (75 - 571)370 (71 - 440)
definitionCHROMAT_FILE: MSMg01no119_a03.b1 PHD_FILE: MSMg01no119_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:01 2005CHROMAT_FILE: MSMg01no119_a03.g1 PHD_FILE: MSMg01no119_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:02 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAGGACCGCGGAAT
TCCACACTTTCATTCCTTGAGACCCACATCTTTTCTAAATATTAAGGAGG
GTATGTACATTAGTCTAAGTGTAGGACAGAAGGTCCTAGGCTGTGTAGCA
AAAGAGCATTATAAGGAAGTAAAGTTAGAGCTATACTCTGAAATTATATC
CATAGTAGTGTCCAAACTTAGTGTGAGTTCTTATAAATGGTTGAATGGGA
AAAGTTATCATGTACAGATTCTTTTTTTTTTAATTAGATGTTTCTTCATT
TACATTTCAAATGTCCCCTCTCCTAGTTTCCTCTCAGAAAATCCCCAATA
CCTTTCCCTCTTCCCCTACTGCCCAACATACCCACTCCCACTTCCTGGCC
CTGGCATTACCCTATAATGGGGACTAGAATCTTCCCATGACCAGGGGCCT
CTCCTTCCACTGATCGCCTACTAGACTATCCTCTGCTACATATGCAGCTA
GAGACATGAGCTCTGGGGGTACTGGATAGTTCATATTATTGTTTCTCCTG
TAAGGATGCAGACCCCTTCAACTTATTACGCACTTTTTCTAGCTCCTTCA
TTGTAGATCCTATGTTCCATCCAGTACATGACTGTGAGCATCCACTTCTG
TATTTGATAGGCACTGGCACAGCCTCACAGGAGACAGTTATATTATGGTC
CTGTCAGC

ATACAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAATGTCATTCTTCCTTACCTGGGATTCCG
AACAGCAGGAAGAGCAGAAGTTGAGAAGGAAACTTCATGTTTCTGCTGTG
ACCTGACATTGATTCTTGCACTGGATGTGGCCAGACTAATAAGAAGTTCT
AATTAATTTCAATGTCTACATGCAAATCAACTAGGCCTGGACTGAGGTTA
TCTCAGTAACTCAACTGGGTGTGTCCAGGTGTCCCAAATCAGACCAGAAT
ATTGCATCCTTTGCTACTGGCAATGGTGTATTTTCTTACAAAATATATGT
TAAACCATTTTCAGCATTGCAGTCTACAAGCACAAGAATTAATTCATTGT
TTTCCATTTTATCACGATCAGAGCACAGCTGTTTATACTTGACATAATAC
ATAATAGAATGTAGCTCTCAAATGTTTTTTTTTTATTTCCATGATTCTAT
AAGGAATTGTTCCACTTGAAACAATTATTATAACATGCTTTTCAGAAACA
GAAATATATTTAACATATTTTTGATAACTTGAGCACTCTTTTTCTTTCTA
TACTACATATTTTGGTATCAATATTCAAAATTATTTAAAAATATGCTATT
ACAGGAAGTGGAGATATGACACCACCATTAATACGACTGTTTGCTCTTTT
ATGAGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_a03.g1 MSMg01no119_a03.g1 CHROMAT_FILE:
MSMg01no119_a03.g1 PHD_FILE: MSMg01no119_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:02 2005
         (370 letters)



>mm_chr6_68880461_68881230
          Length = 770

 Score =  650 bits (336), Expect = 0.0
 Identities = 360/368 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgtcattcttccttacctgggattccgaacagcaggaagagcagaagttgagaagga 60
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 201 caatgtcattcttccttacctgtgattctgaacagcaggaagagcagaagttgagaagga 260

                                                                       
Query: 61  aacttcatgtttctgctgtgacctgacattgattcttgcactggatgtggccagactaat 120
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 261 aacttcatgtttctgctgtgacctgacattgattcttgcactggatttgtccagactaat 320

                                                                       
Query: 121 aagaagttctaattaatttcaatgtctacatgcaaatcaactaggcctggactgaggtta 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aagaagttctaattaatttcaatgtctacatgcaaatcaactaggcctagactgaggtta 380

                                                                       
Query: 181 tctcagtaactcaactgggtgtgtccaggtgtcccaaatcagaccagaatattgcatcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcagtaactcaactgggtgtgtccaggtgtcccaaatcagaccagaatattgcatcct 440

                                                                       
Query: 241 ttgctactggcaatggtgtattttcttacaaaatatatgttaaaccattttcagcattgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctactggcaatggtgtattttcttacaaaatatatgttaaaccattttcagcattgc 500

                                                                       
Query: 301 agtctacaagcacaagaattaattcattgttttccattttatcacgatcagagcacagct 360
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct: 501 agtctacaagcacaagaattaattcattgttttccattttatcaggatcagagcgcaact 560

                   
Query: 361 gtttatac 368
           ||||||||
Sbjct: 561 gtttatac 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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