BAC Information

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BAC

Clone NameMSMg01-120D24
Chromosome6 (Build37)
Map Location 19,685,714 - 19,686,254
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120D24.T7 (MSMg01no120_d24.b1)MSMg01-120D24.TJ (MSMg01no120_d24.g1)
ACCAG330664AG330665
length699765
length of high quality
(start - end)
545 (46 - 590)---
definitionCHROMAT_FILE: MSMg01no120_d24.b1 PHD_FILE: MSMg01no120_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:37 2005CHROMAT_FILE: MSMg01no120_d24.g1 PHD_FILE: MSMg01no120_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCTTTGTTCACCTCTGAGCCCCATTTTTAATGGGGTTATTAGATTT
TCTGGAGTCCATATCCTTTAGAAAGTATCTTATACTTTTTATGTCCATCA
GAACATCCCTTCTTACCATATCTTAGGATTCTCATACACACTCAAAAATC
TCTACCGATTCCGTTCTATCAATACGCAGTGGATATTTGCTTTTTGTTTC
TATTGGATTTCTTATCTCTTTCATATCAAGCCTGAGCCACAGGGAAAGTA
CCAGTGTGGTAGTAAATTTCAAGTCCTGAAGGTATTCACTAAGGAAATTT
CAGATAGGAAAGTTTTGGCTCAGGAAAGAAATGAGAGGTAAAGCTGGAAG
AAGGAATCCTAGCATAGAGTCCAAGCCCTGATTGTACTTGATAGTCTATT
GTTAAACCAAGATCTTTTCCAAATGATGGAGCTTCAAATTGTAAAGTAAC
AGGATAACTTAACCATGGGACAATAAAAGGTCTTAACATTCATTGTCATG
AGAAAGAGTCATGAGATCAACCATGGCACCTTGAGAAATATTGAAACTAA
GTGATATGTGAGGCAATCAATAAGACTACAGTTGTATCTTGAAACTTATG
GCCCCTGCGGGACAAAATGCCTCTTTCTGGTTTGAGGCTGTAGAGAGGG
AGATTGCAAAGGGAAAAAATGAGAAAAAAGGACAGAAAACGGAAAATGGA
AGTTACATCCTGTGACTGGCTGGTGGCGCCAGTCCCAAAATATACAGAAC
TATACAATTACCCGTGGAATAAAATGACAACACGCCAATGGCTCACTAGA
GTTATAACATAGTTCTCGTTCAACCCTAGTGCTCTCTGTTTGATATATAA
AGGTATGGTTGTGTATGGGGAATCAGACAATGCCTATAGGTCACAAGGCG
GTGAAATTGCTGAAAAAAGACAAAAACTCTTCTGGCTGAAATCGGGACAT
ACTGACCTGAAGGGTCATTGAACATCAGAACCACAGACCACTCAGACAAG
ATATATATAGGGGAATCAGATATCAAAGAGGAGTACAACTAATAATCACC
CTTCCAACCACGATTTTCTCATAAGCTGGTATTTTTTCTTTTTTTACCCC
CCTATTATCTCTATGATGATGGGCTAATATACGAGACCAATATAAAATAC
CTATGAAAATATGGATCAACAAAACTCAGCTATCCTGCTGGAGCGTGATC
TGGATACCATAGTTTTAAATGAGGGGCAACGAAAAACAGTAGAAAACTTA
TCTTATGAACCTTACCAACACGTTAAATAAAAACCCAATAGCTTCCCATC
AATAACCCCCTGTCAACAACACCTTGGGCGAAAAAAAGGGAAAAAAAAGG
GTCCAAAAAAAGGGGGACACAAAAAAGGGGAAACAAAGGGGACACCAATG
GGGTGAACATATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_d24.b1 MSMg01no120_d24.b1 CHROMAT_FILE:
MSMg01no120_d24.b1 PHD_FILE: MSMg01no120_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:37 2005
         (545 letters)



>mm_chr6_19685510_19686454
          Length = 945

 Score = 1000 bits (517), Expect = 0.0
 Identities = 535/541 (98%), Gaps = 1/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttgttcacctctgagcccca-tttttaatggggttattagattttctggagtc 64
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttcagctctgagccccattttttaatggggttattagattttctggagtc 264

                                                                       
Query: 65  catatcctttagaaagtatcttatactttttatgtccatcagaacatcccttcttaccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catatcctttagaaagtatcttatactttttatgtccatcagaacatcccttcttaccat 324

                                                                       
Query: 125 atcttaggattctcatacacactcaaaaatctctaccgattccgttctatcaatacgcag 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 atcttaggattctcatacacactcaaaaatctctaccgattccattctatcaatacgcag 384

                                                                       
Query: 185 tggatatttgctttttgtttctattggatttcttatctctttcatatcaagcctgagcca 244
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 tggatatttgctttttgtttctattggatttcttatctctttcacatcaagcctgagcca 444

                                                                       
Query: 245 cagggaaagtaccagtgtggtagtaaatttcaagtcctgaaggtattcactaaggaaatt 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagagaaagtaccagtgtggtagtaaatttcaagtcctgaaggtattcactaaggaaatt 504

                                                                       
Query: 305 tcagataggaaagttttggctcaggaaagaaatgagaggtaaagctggaagaaggaatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcagataggaaagttttggctcaggaaagaaatgagaggtaaagctggaagaaggaatcc 564

                                                                       
Query: 365 tagcatagagtccaagccctgattgtacttgatagtctattgttaaaccaagatcttttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagcatagagtccaagccctgattgtacttgatagtctattgttaaaccaagatcttttc 624

                                                                       
Query: 425 caaatgatggagcttcaaattgtaaagtaacaggataacttaaccatgggacaataaaag 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaatgatggggcttcaaattgtaaagtaacaggataacttaaccatgggacaataaaag 684

                                                                       
Query: 485 gtcttaacattcattgtcatgagaaagagtcatgagatcaaccatggcaccttgagaaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtcttaacattcattgtcatgagaaagagtcatgagatcaaccatggcaccttgagaaat 744

            
Query: 545 a 545
           |
Sbjct: 745 a 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)