BAC Information

Click to search

BAC

Clone NameMSMg01-120H17
Chromosome6 (Build37)
Map Location 60,562,922 - 60,563,372
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726
Downstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120H17.T7 (MSMg01no120_h17.b1)MSMg01-120H17.TJ (MSMg01no120_h17.g1)
ACCAG330839AG330840
length712711
length of high quality
(start - end)
664 (49 - 712)582 (78 - 659)
definitionCHROMAT_FILE: MSMg01no120_h17.b1 PHD_FILE: MSMg01no120_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:56 2005CHROMAT_FILE: MSMg01no120_h17.g1 PHD_FILE: MSMg01no120_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATACTTCCAATACAAAGTTTTTGGGTACCAATACGAACTAT
TAGAAATGAAAAGTCACATTACTCTGATATTTAATTTTAATATGATTCAT
TATTGCTTTCCTATATCTTATGAATCTTACAGGACAAAACATTATATTCT
AGCACTAATGTGTGGCTGTTGACACCTGTATTTGTTCAGGTGAAATATCT
TGGCACAGTGAGAGCATAGAGGCAACTCTACAGTGTTCTAAGGGCCTGCT
GTCTTAGTTAGGGTCTCCATTGCTGTGAAGAGACACCATGACCAAATGAA
CTCTTATAGAAGACAACATTTAACTGGGGCTATCTTACAGGTTCAGAAGT
TTACTCCTTTATCATCAAGTCAGGAGCATGGCACCATCCTGGGAGGCATG
GAATAGGAAGAGCAGAGAATTCTGCATCTGGTCTCAAAGGCAAAAATGAG
AAGACTGGCTTCAAGGAAGGAAGGAAGGTTTCTCAAAGCTCACCCCCACA
ATGACACACACCACTTCCTTCAACAAGTTCATAACTGTTAATAGTGCCAC
TCCCTGGGCCATCATAGGTCACACCATCACACCAGCCATGTGCCCTACCA
GATGTAATTACAAACAGAGGCTAACCTCCCTTATAAAATATATAAATTAT
TGAAAAATATAG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACATATATTGTATATTACCC
CCTATCAGATTTTGGATTGGTAAAGATCTTTCCTACAATTCCTTTTCCAT
AGGTTGTCTTTTATATAAAAATACTAATTAAATAATGTACTATTCCATGA
ATTCAAATGAAACTTCACACCAATTTTGCACATGTACCAGGTTTTGATGG
GTTCAATTTCATTAATCAAAGGGATGTAACAGACAGGTACATAACAATTT
ACGCAGACACTAAAATATATACTTTCTTAAGCACTCCATAGAAATTTTTC
CCAAATAACCTCAATTTACGCCACAAAGCAGTACTCAACAAACTTAAATA
ATTAAAAATCAATTCTGCTTTATGATTGACCACTATAAATTAAAGCTAAA
CTTCAGCCTTAATACAAATAACAGAATATATGCAAACTCATTAAATTAAA
ATAAAACATAAATAGATTTTTAAAAACTAAGTAAGGGGGAAATCAGGAGG
AAATAATATTTATTTTTAGAATTGGATGAAAATAAAAACACAAAATATTG
AAAACTATGAGATACAATGAAAGCAATGCTGAAATTTTATGGAAAATTAA
AGGAATTCATAACGAAAATTTATACGTCTTAATGATTAAAAAATTTTTAA
AAAATCTAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_h17.b1 MSMg01no120_h17.b1 CHROMAT_FILE:
MSMg01no120_h17.b1 PHD_FILE: MSMg01no120_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:56 2005
         (664 letters)



>mm_chr6_60562922_60563985
          Length = 1064

 Score =  779 bits (403), Expect = 0.0
 Identities = 439/451 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatacttccaatacaaagtttttgggtaccaatacgaactattagaaatgaaaa 64
           ||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 451 gaattcaatacctcaaatacaaagtttttgggtaccaatacgaaccattagaaatgagaa 392

                                                                       
Query: 65  gtcacattactctgatatttaattttaatatgattcattattgctttcctatatcttatg 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 391 gtcacattactctgatatttaattttaataagattcattattgctttcctatatcttatg 332

                                                                       
Query: 125 aatcttacaggacaaaacattatattctagcactaatgtgtggctgttgacacctgtatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 331 aatcttacaggacaaaacattatattctagcactaatgtgtggctgttgacacctatatt 272

                                                                       
Query: 185 tgttcaggtgaaatatcttggcacagtgagagcatagaggcaactctacagtgttctaag 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 271 tgttcaggtgaaatatcttggcacagtgagagcatagaggccactctacagtgttctaag 212

                                                                       
Query: 245 ggcctgctgtcttagttagggtctccattgctgtgaagagacaccatgaccaaatgaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggcctgctgtcttagttagggtctccattgctgtgaagagacaccatgaccaaatgaact 152

                                                                       
Query: 305 cttatagaagacaacatttaactggggctatcttacaggttcagaagtttactcctttat 364
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 151 cttatagaagataacatttaactggggctatcttacaggttcaaaagtttactcctttat 92

                                                                       
Query: 365 catcaagtcaggagcatggcaccatcctgggaggcatggaataggaagagcagagaattc 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 91  catcaagtcaggagcatggcaccatcctgggaggcatggaataggaagagcagataattc 32

                                          
Query: 425 tgcatctggtctcaaaggcaaaaatgagaag 455
           |||||||  ||||||||||||||||||||||
Sbjct: 31  tgcatctaatctcaaaggcaaaaatgagaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)