BAC Information

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BAC

Clone NameMSMg01-120O18
Chromosome6 (Build37)
Map Location 75,556,995 - 75,557,360
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
Downstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120O18.T7 (MSMg01no120_o18.b1)MSMg01-120O18.TJ (MSMg01no120_o18.g1)
ACCAG331167AG331168
length669673
length of high quality
(start - end)
378 (46 - 423)365 (45 - 409)
definitionCHROMAT_FILE: MSMg01no120_o18.b1 PHD_FILE: MSMg01no120_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:31 2005CHROMAT_FILE: MSMg01no120_o18.g1 PHD_FILE: MSMg01no120_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCTCTTCAGAGAGGATCCGCGGAATTCTTTGTTTACATCTGTAAAGAT
CTTTTCCCAATCTGTTGGTGGCCTTTTCTCTCATTGACAGTGTCTTTTGC
ATAACAGAACCTTGACAAGTTTATGAGGTCCCATTTGTCAATTCTCAATC
TTACAGCTCAAACCATTGCTGTTCTGTTTGAGAATTTTCCCCCTGGACCC
ATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTC
TGGTTATATGTAGAGTTCCTTGATCCATGTAGACTTGACCTTATAACAAG
GAGATAAGAATGGATCAATTTGGAGGCTAATTATGGGATGGATCCCTGGA
TATGGCAGTTGCTAGATGATCCATCCTTTTGTCTCAACTCCAAACTTTGT
CTCTGTAACTCCTTCCATGGATGTTTTGTTTCCGATTCTAACAAAGGGCA
AAGTGTCCACACTTTGGACTTTGTTCTTTTTAAATTACATGTGTATTGCA
AATTGTAACTTATATTTTGCAATACTAAGATACTGGGGTCAAAACCACTT
ATAGGCGAATACAAATCACTTGAGCTACTTGCGAAAGCGCAACCTCCCTC
AAAATGATCCCTTTCCAAATAAACCATTTAAACACGAAGTTCTTAAACTC
CTTCTATTTAATAAGTCAA
GGCGCCGCCTGTCGAAAAAGTGAGGTGACCTATAGATTCCCCGCGGAATT
CCAATCTTTAAAGAAATAAAGAAGTAATTCATTTATTTTTGACTTACCAT
ATTCTTATGAAAATTAATGAATTTATGAAGATGTAGATTCTGCTAGTTTT
AAAATTACTCTGTTGAAATTGATATTTGCCCCCTTACAAATCCATTCCCC
AACAGGATTGCCTTGTCTGACCTCAGTCAGAGATTGCCAGGGAAACCCCA
CCCTCTCAAAAAAAAATGTTGAGAAGGATGAAGGAAAAAAGCTCTCTGTG
ATGGGGAACAATATCAACGTGGATTCATTCAAATTTAGGACAGATTTGCA
TAATTCCTACTTGAAAATTATTTATTATAAGTTTCTGAATTTACGGAAAA
TTAAAGTCATAATAGCTGACAAAGGGAAAGATGATACCCTTGAATGTAAC
TTTAATTTCTTTCAAAGTCTATTTTTAATGATGGTTCCTTAAATTCTTTT
TAACCTCTCTTCTAGCTCACCAACCAACAGATGTAGTAGAGAAAGGATAC
AGGCGAAGTACACCTGTTTAGAAACGGTTCTTTGCAACAAATTCCATCTA
TATTGCCAAGAATACGCGACCACCGGTCCAGTGGNCAATCCACTCTCTAA
CCTGTGCAATGAAAACATGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_o18.g1 MSMg01no120_o18.g1 CHROMAT_FILE:
MSMg01no120_o18.g1 PHD_FILE: MSMg01no120_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:32 2005
         (365 letters)



>mm_chr6_75556796_75557560
          Length = 765

 Score =  617 bits (319), Expect = 0.0
 Identities = 355/367 (96%), Gaps = 3/367 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaattccaatctttaaag-aaataaagaagtaattcatttatttttgacttaccatatt 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 200 ggaattccaatctttaaagcaaataaagaagtaattcatttatttttgacttagcatatt 259

                                                                       
Query: 60  cttatgaaaattaatgaatttatgaagatgtagattctgctagttttaaaattactctgt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttatgaaaattaatgaatttatgaagatgtagattctgctagttttaaaattactctgt 319

                                                                       
Query: 120 tgaaattgatatttgcccccttacaaatccattccccaacaggattgccttgtctgacct 179
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 tgaaattgatatttgcccccttacaaatccattccccaacagggttgccttgtctgacct 379

                                                                       
Query: 180 cagtcagagattgccagggaaaccccaccctctcaaaaaaaaatgttgagaaggatgaag 239
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagtcagagattgccagggggaccccaccctctcaaaaaaaaatgttgagaaggatgaag 439

                                                                       
Query: 240 gaaaaaagctctctgtgatggggaacaatatcaacgtggattcattcaaatttaggacag 299
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct: 440 gaaaaaagctctctgtgatggggaacaataccaacgtggattcattcaaaattaggagag 499

                                                                       
Query: 300 atttgcataattcctacttgaaaat-tatttattataagtttctgaatttacggaaaatt 358
           ||||||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||
Sbjct: 500 atttgcataattcctacttgaga-tgtatttattataagtttctgaatttagggaaaatt 558

                  
Query: 359 aaagtca 365
           |||||||
Sbjct: 559 aaagtca 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)