Query= MSMg01no122_f01.b1 MSMg01no122_f01.b1 CHROMAT_FILE:
MSMg01no122_f01.b1 PHD_FILE: MSMg01no122_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:38 2005
(267 letters)
>mm_chr6_28840839_28841504
Length = 666
Score = 485 bits (251), Expect = e-142
Identities = 263/267 (98%), Gaps = 1/267 (0%)
Strand = Plus / Minus
Query: 1 agtttctcaagccactcgagccaggggcttaagacccttgaaactccaggacatgactgg 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agtttctcaagccactcaagccaggggcttaagacccttgaaactccaggacatgactgg 407
Query: 61 gttttcgtgtacagcactggctgcctcctgggctgtcgtacaggctccgaggacctcaaa 120
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 406 gttttcgtgtacagcactggctgcctcctgggctgttgta-aggctccgaggacctcaaa 348
Query: 121 acagccctggcactttgctggacccaatgccatgctaaatgctgtctgcgtattaatctg 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 acagccctgacactttgctggacccaatgccatgctaaatgctgtctgcgtattaatctg 288
Query: 181 tttagcagggaggcaagaagggaatgaacaactgggggcaaaactggaaaagcacaggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tttagcagggaggcaagaagggaatgaacaactgggggcaaaactggaaaagcacaggga 228
Query: 241 aggtatataatccatggttccaaaccc 267
|||||||||||||||||||||||||||
Sbjct: 227 aggtatataatccatggttccaaaccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 666
Length adjustment: 9
Effective length of query: 258
Effective length of database: 657
Effective search space: 169506
Effective search space used: 169506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no122_f01.g1 MSMg01no122_f01.g1 CHROMAT_FILE:
MSMg01no122_f01.g1 PHD_FILE: MSMg01no122_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:38 2005
(460 letters)
>mm_chr6_28692590_28693454
Length = 865
Score = 818 bits (423), Expect = 0.0
Identities = 453/465 (97%), Gaps = 5/465 (1%)
Strand = Plus / Plus
Query: 1 catcacctgaggaaagttattcttttcatctgagccacagaaataagcagtctgaagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcacctgaggaaagttattcttttcatctgagccacagaaataagcagtctgaagact 260
Query: 61 ttacctgttgaaaggagcatgctaagcaaagatacgcttgccataacaaggaaagacaga 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcctgttgaaaggagcatgctaagcaaagatacgcttgccataacaaggaaagacaga 320
Query: 121 caccgtcctgtagctgtgactgcgatgcgaaagagctgacatctcttggctattacagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccgtcctgtagctgtgactgcgatgcgaaagagctgacatctcttggctattacagac 380
Query: 181 aatttaattgacttcataaaatcccttccttgttaaaatgctgtcagcgtggatgaagtc 240
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 aatttaattgacttcataagatcccttcattgttaaaatgctgtcagcgtggatgaagtc 440
Query: 241 tccagtcttcctcttagtgggtgttccatgttattttttcccctaagcctttgaatcctt 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tccagtcttcctcttagtgggtgttccatgttatttcatcccctaagcctttgaatcctt 500
Query: 301 gcctcaagaacatgggtgccccatgtcttagtttacaattttacatggtaagctgtagaa 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 gcctcaagaacatgggtgccccatgtcttagtttacaatcttacatggtaagctgtagaa 560
Query: 361 gtttcatgccttcaactttcattgctgacctcctcttcaaatctctaccatcgtca-t-- 417
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 561 gtttcatgccttcaactttcattgctgacctcctcttctaatctctaccatcgtcagtgg 620
Query: 418 --tgcctttctctgtcatcttcccacggctcatttctggaggcgg 460
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgcctttctctgtcatcttcccacggctcatttctggaggcgg 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 865
Length adjustment: 10
Effective length of query: 450
Effective length of database: 855
Effective search space: 384750
Effective search space used: 384750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
