Query= MSMg01no122_g10.b1 MSMg01no122_g10.b1 CHROMAT_FILE:
MSMg01no122_g10.b1 PHD_FILE: MSMg01no122_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:48 2005
(782 letters)
>mm_chr6_20074923_20076105
Length = 1183
Score = 1431 bits (740), Expect = 0.0
Identities = 773/788 (98%), Gaps = 10/788 (1%)
Strand = Plus / Plus
Query: 4 ggaattc-aaggagagtagctcccttttgatcctgccagttgtctgtacaatttcttgca 62
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaaggagagtagctcacttttgatcctgccagttgtctgtacaatttcttgca 263
Query: 63 agacactctcatagttttttttttcttcttcctcttcttaacattcatccttgttcacta 122
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 agatactctcatagttttttttttcttcttcttcttcttaacattcatccttgttcacta 323
Query: 123 gaaaacattgatgaacttaagaactccattcattttttt-aaatagatttatttatcata 181
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct: 324 gaaaacattgatgaacttaagaactccattcatttttttaaaatagattta-ttaacata 382
Query: 182 tattatgagtattttggccacgtgcctgataccattagaggtcagaagagatcattccat 241
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tattatgagtattttggccatgtgcctgataccattagaggtcagaagagatcattccat 442
Query: 242 ccctaggaatctaatattccaaaaagttgtgagatgccatcttggtgcttcgaataaaac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccctaggaatctaatattccaaaaagttgtgagatgccatcttggtgcttcgaataaaac 502
Query: 302 cagcatcctcttcaatagaaaagagtgttattaaccagtaaaaccactccaatcctcata 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cagcatcctcttcaatagaaaagagtgttattaaccagtaaaaccactccaatcctcata 562
Query: 362 gtttattgtttacttcactaatctcatacaatgttacattctataggcagttgaagactg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtttattgtttacttcactaatctcatacaatgttacattctataggcagttgaagactg 622
Query: 422 ctgagaataagaaaatttgtctttctcaaggatgagtccctgctttgttatctgacacta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgagaataagaaaatttgtctttctcaaggatgagtccctgctttgttatctgacacta 682
Query: 482 agtgatcagagtggaaatacttcactcaga-------gtaaaaagatctggatttcactg 534
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 683 agtgatcagagtggaaatacttcactcagaaacaagagtaaaaagatctggatttcactg 742
Query: 535 ttctacatgtaaggtatccagttttcatagcatcatttgttgaagatgctcttctttctg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttctacatgtaaggtatccagttttcatagcatcatttgttgaagatgctcttctttctg 802
Query: 595 ctatgtatttttagtatctctgtcaaatatcaaatgattacacttgaatgtactcatttt 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ctatgtatttttagtatctctgtcaaatatcaaatgattacacttgaatgtactcatttt 862
Query: 655 tgtttggttcttttatttttgtttcatttgactaccaagtctaattttatgtcagtatgg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tgtttggttcttttatttttgtttcatttgactaccaagtctaattttatgtcagtatgg 922
Query: 715 tggttgttactatatatgtaaaatcccatgaactgcgatagctctctaatatatttttct 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tggttgttactatatatgtaaaatcccatgaactgcgatagctctctaatatatttttct 982
Query: 775 tgccccct 782
||||||||
Sbjct: 983 tgccccct 990
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 782
Length of database: 1183
Length adjustment: 10
Effective length of query: 772
Effective length of database: 1173
Effective search space: 905556
Effective search space used: 905556
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_g10.g1 MSMg01no122_g10.g1 CHROMAT_FILE:
MSMg01no122_g10.g1 PHD_FILE: MSMg01no122_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:49 2005
(744 letters)
>mm_chr6_20206968_20208111
Length = 1144
Score = 1402 bits (725), Expect = 0.0
Identities = 740/745 (99%), Gaps = 1/745 (0%)
Strand = Plus / Minus
Query: 1 agatggttttctggatatgac-ttttttttccctcaagaacgcagagagcctggaacttc 59
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 757 agatggttttctggatatgactttttttttcattcaagaacgcagagagcctggaacttc 698
Query: 60 atccacgggcatcatcagaacagagaaagaaagaggaggagggggaggggcagaagacaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 atccacgggcatcatcagaacagagaaagaaagaggaggagggggaggggcagaagacaa 638
Query: 120 ggaactgagaaggagaaatggaggaaaaggaaaaaaaacataaaggaccaagaaattgaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggaactgagaaggagaaatggaggaaaaggaaaaaaaacataaaggaccaagaaattgaa 578
Query: 180 ggaaagtagggaaagaaggagagaaacaggtcatgaccatagtgtggaatgctggttagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ggaaagtagggaaagaaggagagaaacaggtcatgaccatagtgtggaatgctggttagt 518
Query: 240 aggaataagattttctgatagtaggattgtgagtcaatgtagttggtgtttattatatct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aggaataagattttctgatagtaggattgtgagtcaatgtagttggtgtttattatatct 458
Query: 300 gatatgacattgtctattcattctttcttttacttccattttagactgtccatctctctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gatatgacattgtctattcattctttcttttacttccattttagactgtccatctctctg 398
Query: 360 tctatctttctctttctctctccccttctcttcttccatccttcctttccttcttcactc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tctatctttctctttctctctccccttctcttcttccatccttcctttccttcttcactc 338
Query: 420 cttccttactgtctgtctatcttttgtttctccatattctgtgtttttattttgtaaaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cttccttactgtctgtctatcttttgtttctccatattctgtgtttttattttgtaaaag 278
Query: 480 gatctctttcatccatgtcttagtatacagacatgacagtaggaagaccaatagcatgcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gatctctttcatccatgtcttagtatacagacatgacagtaggaagaccaatagcatgcc 218
Query: 540 attgtattctcttcacacattctcatcaatctcaagctgtccaataagcagacacactca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 attgtattctcttcacacattctcatcaatctcaagctgtccaataagcagacacactca 158
Query: 600 tcaaggactcaggtccttgttctgaacttattgttttttcatgaaattaattttccttta 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tcaaggactcaggtccttgttctgaacttattgttttttcatgaaattaattttcctttg 98
Query: 660 tttttcaaactgtgattccttcctggtagccagccaagactgctcttacttgtgacaggg 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gttttcaaactgtgattccttcctggtagccagccaagactgctcttacttgtgacaggg 38
Query: 720 aactcatattctttttcatattatt 744
|||||||||||||||||||||||||
Sbjct: 37 aactcatattctttttcatattatt 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1144
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1134
Effective search space: 832356
Effective search space used: 832356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
