GAAATCTTNNNAATAATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGC
GGAATTCTGTTCGGAAAGAAGTGTCTTTTGGTCTGACATCATGTTCTGAT
AGTGACTGTCACCTCCTATTCTGCTTTTCATGTTGTCCTTTAGCCAAGGC
CAAACAGGATGTCATGCAGCAAAATTATAGAATGTGTATAGTATTCCCAC
ACAAAGTATAGCATGGATCTCAGGACGGAGTCTTTGTCAGAAGACCATAT
TTCTTTAGTGTTAATTCAAAAGTCCTTTCCCACAACAGGAACTTTGGTTT
TCTTGCGTATTACTACTTATTGAAAACACTGCCATTCTTAAATCAGCAGT
GCAAAAGATTATCAATTGAAGATGCATTTGTATAGTTGATCATTTTCTAG
ATCTACTCCTGGTTATTGATGAGTCAGGTTAATTAGAATGGTAGAAAAAG
AGTGAACATATATTGAACTATGAAGATGAAGGGGAATCCATGGAAAGAAA
TGTGCCAACTATATAGATGGTGAAATGGGATGTAGTTGGGACTTACTATT
CAATAGATTTTTTTTAAAAGTAAAGCCAGTTTTACAAGTAATATTGTACA
ACTTGTAAAGGTCAAGGCCTCTCCTCATAAGACATTTTAAAATCAACTAG
ATAGCCCAGATAAATGACCATATAAGTTAGCTGCTAATTACTAAAAAAAG
TTGACCTCGTATTCTGCAAACTCCCATATCTTAAAGTAAATTATTTAACT
TTCCCTTTTTTATCATCCTTGTTCTCGAACTACCATACTTCCCTCCCTCA
GTGGTAATCTATCACCTGCCTACTTTTTCGCAAATTGCCTCACCTTCACC
GCTCACTACTCCTCTATCTAAACTCTCCTCCTTTCCAACCTTTTTCCCTC
TCCACCCTCCTTTTCCTGTTATTCTTCTTTCTCTTTCCCTTCCTTTCCTA
TCCTATTCTAACCACACATCTCCCTTATTCCGCCAAAATCCCCCTTCCCT
ATTTTCCTTTCTTCCCATACTTCCTATCTAATCTACTTTCTCCCCATTCC
TTTTCTCCTTCTCTCTTCTCCTTCCCTTCTTTACTTACTCACTACCTCTC
TCTCTCCTCCTCCTTTTCCCTCATTCTCATCTCCTTTCTCTTTCACTACC
TCCTTATATATTCTCTCTTCTTCTTCCTCTACACTACTCCTTCTCCTACT
TCATTATCCTTCTTCCCTCTACTTCTACTACTTACATCTACTCTATCATC
TCCCTCTCTCCTTTTCTATATCCC

CTACTTTTTNTNATTCACTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTCCAGCCCAAGAAAAATGC
AAAGGCACAGATACACAGACCAGTTTCTGCACTTAGAGAGTAGAGGCCCT
GATGATTTTTTACCAATATCAGGATTGGCTTATTTTAGCTCAAATCCTTT
GGGAGGGACTAATTTCCATCACTCTGCTTTAAAGTGTGGTGTATCTAATG
AGCTGGATGAAAATGCTGAGGTATCAAAGGCTGCAGCCACTGGAGCAAGA
AGGCAGTAAACTCACTAGGAACAGCTGCTTAATAAAAGGCTGTTAGCAGG
CCAGCAAACAAAAGAGATTTCGCGGAGGCATTAATGTGATATAATCACTT
AGACATTGACATGAAAGAGGTTTATTATTTATCAAAATTCAGGAGTTTTA
TTCAATACCTGAAGATACACTTTTGAATATTTTTCTTCTCTTCTTTTTTT
TTCACAGAAATCCAAAAATAAAAAAAGGGCAGTCATGTCTTTATGAAAAC
TAGAATATGTGGTGTGCTCACTTGATATACATTTATTGTGAAGAAGAAAA
ATGCAAGGTGTGAACTCAGAAAAGACATAATTGCTATGTTCTTGTTTCAA
AAGGTCAGCACACAGGGAGAGGTGAGCTAGACCAAGATGTAGTGTAGATG
TGAGGACTGTGGGGTTAAGCATGCACTTGTGAGCATCTGTGCAGTATATA
TATGTACCATAGTTATAACTCAAATGAATTTTGAATTTTACATGACATGA
GTGAGTGAATGAAATGAAAAATGGAGGCTACTGATCTATATGTGTCTTTA
TTTCTCACTAAGCCCTAAGCCTATTCATACTTCATTTTTGCTACCTAAAC
CTTGATCAGACCCCTGACCGAAAGTCCAATTCCTTATTCTCCTCCCTGAT
AAAAGCCCCCTATCCACTGGGTAATTGTCCCCACAACAACCGAAAACCCC
GGGATTTTTCTTTCCCTTCCAAAAAAAATACCAAATTTCTCGCCCCCCCC
AATTTTCCCCACTGGTCCCCCCCTTCTCATTTTTTTTAAAAAATCTATAA
AGTTTACAAAATTGAGATTTGTGTTTTAAAAACCTTTCTCCATTGAATTT
TAAAACGGTTTTTTTCTGGGGTATAATTTTTGTTGGTCACCCCTCACTTT
TTCCATATCATCCTGCAACATCCTNCCTATTCTCTGGCCTATTCTCTCTC

Query= MSMg01no123_f06.b1 MSMg01no123_f06.b1 CHROMAT_FILE:
MSMg01no123_f06.b1 PHD_FILE: MSMg01no123_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:54 2005
         (377 letters)



>mm_chr6_106123568_106124344
          Length = 777

 Score =  690 bits (357), Expect = 0.0
 Identities = 372/377 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacatcatgttctgatagtgactgtcacctcctattctgcttttcatgttgtcctttag 60
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 577 tgacatcatgttctgatagtgactgtcacctccaactctgcttttcatgttgtcctttag 518

                                                                       
Query: 61  ccaaggccaaacaggatgtcatgcagcaaaattatagaatgtgtatagtattcccacaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 517 ccaaggccaaacaggatgtcatgcagcaaaattatagaatgtgtatagtatttccacaca 458

                                                                       
Query: 121 aagtatagcatggatctcaggacggagtctttgtcagaagaccatatttctttagtgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aagtatagcatggatctcaggacggagtctttgtcagaagaccatatttctttagtgtta 398

                                                                       
Query: 181 attcaaaagtcctttcccacaacaggaactttggttttcttgcgtattactacttattga 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 397 attcaaaagtcctttcccacagcaggaactttggttttcttgcgtattactacttattga 338

                                                                       
Query: 241 aaacactgccattcttaaatcagcagtgcaaaagattatcaattgaagatgcatttgtat 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 337 aaacactgccattcttaaatcagcagtgcaaaaggttatcaattgaagatgcatttgtat 278

                                                                       
Query: 301 agttgatcattttctagatctactcctggttattgatgagtcaggttaattagaatggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agttgatcattttctagatctactcctggttattgatgagtcaggttaattagaatggta 218

                            
Query: 361 gaaaaagagtgaacata 377
           |||||||||||||||||
Sbjct: 217 gaaaaagagtgaacata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no123_f06.g1 MSMg01no123_f06.g1 CHROMAT_FILE:
MSMg01no123_f06.g1 PHD_FILE: MSMg01no123_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:55 2005
         (644 letters)



>mm_chr6_106028049_106029092
          Length = 1044

 Score = 1214 bits (628), Expect = 0.0
 Identities = 640/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagagagtagaggccctgatgattttttaccaatatcaggattggcttattttagctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagagagtagaggccctgatgattttttaccaatatcaggattggcttattttagctca 260

                                                                       
Query: 61  aatcctttgggagggactaatttccatcactctgctttaaagtgtggtgtatctaatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcctttgggagggactaatttccatcactctgctttaaagtgtggtgtatctaatgag 320

                                                                       
Query: 121 ctggatgaaaatgctgaggtatcaaaggctgcagccactggagcaagaaggcagtaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggatgaaaatgctgaggtatcaaaggctgcagccactggagcaagaaggcagtaaact 380

                                                                       
Query: 181 cactaggaacagctgcttaataaaaggctgttagcaggccagcaaacaaaagagatttcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactaggaacagctgcttaataaaaggctgttagcaggccagcaaacaaaagagatttcg 440

                                                                       
Query: 241 cggaggcattaatgtgatataatcacttagacattgacatgaaagaggtttattatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cggaggcattaatgtgatataatcacttagacattgacatgaaagaggtttattatttat 500

                                                                       
Query: 301 caaaattcaggagttttattcaatacctgaagatacacttttgaatatttttcttctctt 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgaaattcaggagttttattcaatacctgaagatacacttttgaatatttttcttctctt 560

                                                                       
Query: 361 ctttttttttcacagaaatccaaaaataaaaaaagggcagtcatgtctttatgaaaacta 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttttttttccacagaaatccaaaaataaaaaaagggcagtcatgtctttatgaaaacta 620

                                                                       
Query: 421 gaatatgtggtgtgctcacttgatatacatttattgtgaagaagaaaaatgcaaggtgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaatatgtggtgtgctcacttgatatacatttattgtgaagaagaaaaatgcaaggtgtg 680

                                                                       
Query: 481 aactcagaaaagacataattgctatgttcttgtttcaaaaggtcagcacacagggagagg 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactcagcaaagacataattgctatgttcttgtttcaaaaggtcagcacacagggagagg 740

                                                                       
Query: 541 tgagctagaccaagatgtagtgtagatgtgaggactgtggggttaagcatgcacttgtga 600
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 tgagctagaccaagatgtagtgtagatgtgaggactgtggggttaaggatgcacttgtga 800

                                                       
Query: 601 gcatctgtgcagtatatatatgtaccatagttataactcaaatg 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcatctgtgcagtatatatatgtaccatagttataactcaaatg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)